[MITgcm-support] Using NetCDF

[Jody Klymak]

Hi Seth,

I’ve not tried to build the mitgcm with a netcdf install using conda, 
but those are hdf4/5 libraries that netcdf requires.   Did you try 
`condo list hdf`,

`conda info netcdf4`?

My guess is somehow you didn’t install all the dependencies for netcdf 
(though you may want to check why that occurred).  Have you checked that 
netcdf works at all?  I think `condo install netcdf4` installs ncdump, 
so you could see if that runs (though make sure you are using the conda 
one `/home/sgoodnight/miniconda3/envs/ncl_stable/bin/ncdump` probably?)

Cheers,  Jody

On 29 Jun 2017, at 15:25, Seth Goodnight wrote:

> Good afternoon. I am trying to run MITgcm with NetCDF enabled as 
> output
> files. I am using the OPTFILE (attached) linux_amd64_gfortran. I am 
> pretty
> sure I have defined NETCDF_ROOT correctly in my .bashrc. However, when 
> I
> run genmake the following is error is given,
>
> "Can we create NetCDF-enabled binaries...  no"
>
> Specifically inside the genmake.log (also attached), it gives the 
> error,
>
> /usr/bin/ld: warning: libmfhdf.so.0, needed by 
> /home/sgoodnight/miniconda3/
> envs/ncl_stable/lib/libnetcdf.so, not found (try using -rpath or
> -rpath-link)
>
> /usr/bin/ld: warning: libdf.so.0, needed by 
> /home/sgoodnight/miniconda3/
> envs/ncl_stable/lib/libnetcdf.so, not found (try using -rpath or
> -rpath-link)
>
> Any ideas for possible fixes?
>
> Thanks


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