[MITgcm-support] netcdf
mohammad akbarinasab
akbarinasabmohamad at gmail.com
Mon Dec 9 22:57:20 EST 2013
Dear MITGCM users
I Install mitgcm on CentOS-6.5
How I can install NETCDF on CentOS-6.5,
Please show me website NETCDF files
how I can find path netcdf at CentOS-6.5?
Where do I put the file path in opt file
(NETCDF )?
Meanwhile opt file
#!/bin/bash
#
# $Header:
/u/gcmpack/MITgcm/tools/build_options/linux_amd64_gfortran+mpi_generic,v
1.2 2010/12/25 18:25:56 jmc Exp $
# $Name: checkpoint63 $
#
# Tested with gcc-gfortran v4.1.x on FC5, FC6, FC8, using flags
# formally for gcc-gfortran 4.3*
# + with gcc-gfortran v4.3.x on FC9, FC10
# + with gcc-gfortran v4.4.x on FC11,FC12,FC13
#
# on baudelaire.csail.mit.edu (FC13), uses:
# export
MPI_GCC_DIR=/srv/software/gcc/gcc-packages/gcc-4.4.5/mpich2/mpich2-1.3
# export MPI_INC_DIR=$MPI_GCC_DIR/include
# export PATH=$MPI_GCC_DIR/bin:$PATH
#
#-------
# run with OpenMP: needs to set environment var. OMP_NUM_THREADS
# and generally, needs to increase the thread stack-size:
# - sh,bash:
# > export OMP_NUM_THREADS=2
# > export GOMP_STACKSIZE=400m
# - csh,tcsh:
# > setenv OMP_NUM_THREADS 2
# > setenv GOMP_STACKSIZE 400m
#-------
FC=${FC:=mpif77}
F90C=${F90C:=mpif90}
CC=${CC:=mpicc}
DEFINES='-DWORDLENGTH=4 -DNML_TERMINATOR'
CPP='cpp -traditional -P'
EXTENDED_SRC_FLAG='-ffixed-line-length-132'
GET_FC_VERSION="--version"
OMPFLAG='-fopenmp'
NOOPTFLAGS='-O0'
MPI='true'
INCLUDEDIRS='/usr/local/include'
LIBDIRS='/usr/local/lib/'
if test "x$DEVEL" != x ; then
FFLAGS='-g -Wall -W -ffpe-trap=invalid,zero,overflow -fbounds-check'
else
FFLAGS=''
fi
# Requires gfortran from 2006 onwards for -fconvert=big-endian
FFLAGS="$FFLAGS -fconvert=big-endian -fimplicit-none"
# for big objects:
FFLAGS="$FFLAGS -fPIC"
if test "x$IEEE" = x ; then
# No need for IEEE-754
FOPTIM='-O3 -funroll-loops'
CFLAGS="$FOPTIM -fPIC"
else
# Try to follow IEEE-754
FFLAGS="$FFLAGS -Waliasing -Wampersand -Wsurprising -Wline-truncation"
FOPTIM='-O0'
CFLAGS="$FOPTIM -fPIC"
# to get plenty of warnings :
# FFLAGS="$FFLAGS -Wconversion -Wimplicit-interface -Wunused-labels"
# more checking (to use with testreport, put DEVEL option in IEEE section):
# FOPTIM="$FOPTIM -g -ffpe-trap=invalid,zero,overflow -fbounds-check"
fi
F90FLAGS=$FFLAGS
F90OPTIM=$FOPTIM
if [ "x$NETCDF_ROOT" != x ] ; then
INCLUDEDIR="${NETCDF_ROOT}/include"
INCLUDES="-I${NETCDF_ROOT}/include"
LIBDIR="${NETCDF_ROOT}/lib"
LIBS="-L${NETCDF_ROOT}/lib"
elif [ "x$NETCDF_HOME" != x ]; then
INCLUDEDIR="${NETCDF_HOME}/include"
INCLUDES="-I${NETCDF_HOME}/include"
LIBDIR="${NETCDF_HOME}/lib"
LIBS="-L${NETCDF_HOME}/lib"
elif [ "x$NETCDF_INC" != x -a "x$NETCDF_LIB" != x ]; then
NETCDF_INC=`echo $NETCDF_INC | sed 's/-I//g'`
NETCDF_LIB=`echo $NETCDF_LIB | sed 's/-L//g'`
INCLUDEDIR="${NETCDF_INC}"
INCLUDES="-I${NETCDF_INC}"
LIBDIR="${NETCDF_LIB}"
LIBS="-L${NETCDF_LIB}"
elif [ "x$NETCDF_INCDIR" != x -a "x$NETCDF_LIBDIR" != x ]; then
INCLUDEDIR="${NETCDF_INCDIR}"
INCLUDES="-I${NETCDF_INCDIR}"
LIBDIR="${NETCDF_LIBDIR}"
LIBS="-L${NETCDF_LIBDIR}"
elif test -d /usr/include/netcdf-3 ; then
INCLUDES='-I/usr/include/netcdf-3'
LIBS='-L/usr/lib/netcdf-3 -L/usr/lib64/netcdf-3'
elif test -d /usr/local/netcdf ; then
INCLUDES='-I/usr/local/netcdf'
elif test -d /usr/local/netcdf ; then
INCLUDES='-I/usr/local/netcdf/include'
LIBS='-L/usr/local/netcdf/lib'
elif test -d /usr/local/include/netcdf.inc ; then
INCLUDES='-I/usr/local/include'
LIBS='-L/usr/local/lib64'
fi
MPI_HEADER_FILES='mpif.h mpif-mpi-io.h'
MPI_HEADER_FILES_INC='/usr/local/include/mpif.h
/usr/local/include/mpif-mpi-io.h'
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