[MITgcm-support] Fwd: netcdf

[Mohammad Akbarinasab]

---------- Forwarded message ----------
From: mohammad akbarinasab <akbarinasabmohamad at gmail.com>
Date: Mon, Dec 9, 2013 at 7:57 PM
Subject: netcdf
To: mitgcm-support at mitgcm.org


Dear MITGCM users
I Install mitgcm on CentOS-6.5
How I can install NETCDF on CentOS-6.5,
Please show me website NETCDF files
how I can find path netcdf at CentOS-6.5?
Where do I put the file path in opt file
(NETCDF )?

Meanwhile opt file

#!/bin/bash

#

# $Header:
/u/gcmpack/MITgcm/tools/build_options/linux_amd64_gfortran+mpi_generic,v
1.2 2010/12/25 18:25:56 jmc Exp $

# $Name: checkpoint63 $

#

# Tested with gcc-gfortran v4.1.x on FC5, FC6, FC8, using flags

# formally for gcc-gfortran 4.3*

# + with gcc-gfortran v4.3.x on FC9, FC10

# + with gcc-gfortran v4.4.x on FC11,FC12,FC13

#

# on baudelaire.csail.mit.edu (FC13), uses:

# export
MPI_GCC_DIR=/srv/software/gcc/gcc-packages/gcc-4.4.5/mpich2/mpich2-1.3

# export MPI_INC_DIR=$MPI_GCC_DIR/include

# export PATH=$MPI_GCC_DIR/bin:$PATH

#

#-------

# run with OpenMP: needs to set environment var. OMP_NUM_THREADS

# and generally, needs to increase the thread stack-size:

# - sh,bash:

# > export OMP_NUM_THREADS=2

# > export GOMP_STACKSIZE=400m

# - csh,tcsh:

# > setenv OMP_NUM_THREADS 2

# > setenv GOMP_STACKSIZE 400m

#-------

FC=${FC:=mpif77}

F90C=${F90C:=mpif90}

CC=${CC:=mpicc}

DEFINES='-DWORDLENGTH=4 -DNML_TERMINATOR'

CPP='cpp -traditional -P'

EXTENDED_SRC_FLAG='-ffixed-line-length-132'

GET_FC_VERSION="--version"

OMPFLAG='-fopenmp'

NOOPTFLAGS='-O0'

MPI='true'

INCLUDEDIRS='/usr/local/include'

LIBDIRS='/usr/local/lib/'

if test "x$DEVEL" != x ; then

FFLAGS='-g -Wall -W -ffpe-trap=invalid,zero,overflow -fbounds-check'

else

FFLAGS=''

fi

# Requires gfortran from 2006 onwards for -fconvert=big-endian

FFLAGS="$FFLAGS -fconvert=big-endian -fimplicit-none"

# for big objects:

FFLAGS="$FFLAGS -fPIC"

if test "x$IEEE" = x ; then

# No need for IEEE-754

FOPTIM='-O3 -funroll-loops'

CFLAGS="$FOPTIM -fPIC"

else

# Try to follow IEEE-754

FFLAGS="$FFLAGS -Waliasing -Wampersand -Wsurprising -Wline-truncation"

FOPTIM='-O0'

CFLAGS="$FOPTIM -fPIC"

# to get plenty of warnings :

# FFLAGS="$FFLAGS -Wconversion -Wimplicit-interface -Wunused-labels"

# more checking (to use with testreport, put DEVEL option in IEEE section):

# FOPTIM="$FOPTIM -g -ffpe-trap=invalid,zero,overflow -fbounds-check"

fi

F90FLAGS=$FFLAGS

F90OPTIM=$FOPTIM

if [ "x$NETCDF_ROOT" != x ] ; then

INCLUDEDIR="${NETCDF_ROOT}/include"

INCLUDES="-I${NETCDF_ROOT}/include"

LIBDIR="${NETCDF_ROOT}/lib"

LIBS="-L${NETCDF_ROOT}/lib"

elif [ "x$NETCDF_HOME" != x ]; then

INCLUDEDIR="${NETCDF_HOME}/include"

INCLUDES="-I${NETCDF_HOME}/include"

LIBDIR="${NETCDF_HOME}/lib"

LIBS="-L${NETCDF_HOME}/lib"

elif [ "x$NETCDF_INC" != x -a "x$NETCDF_LIB" != x ]; then

NETCDF_INC=`echo $NETCDF_INC | sed 's/-I//g'`

NETCDF_LIB=`echo $NETCDF_LIB | sed 's/-L//g'`

INCLUDEDIR="${NETCDF_INC}"

INCLUDES="-I${NETCDF_INC}"

LIBDIR="${NETCDF_LIB}"

LIBS="-L${NETCDF_LIB}"

elif [ "x$NETCDF_INCDIR" != x -a "x$NETCDF_LIBDIR" != x ]; then

INCLUDEDIR="${NETCDF_INCDIR}"

INCLUDES="-I${NETCDF_INCDIR}"

LIBDIR="${NETCDF_LIBDIR}"

LIBS="-L${NETCDF_LIBDIR}"

elif test -d /usr/include/netcdf-3 ; then

INCLUDES='-I/usr/include/netcdf-3'

LIBS='-L/usr/lib/netcdf-3 -L/usr/lib64/netcdf-3'

elif test -d /usr/local/netcdf ; then

INCLUDES='-I/usr/local/netcdf'

elif test -d /usr/local/netcdf ; then

INCLUDES='-I/usr/local/netcdf/include'

LIBS='-L/usr/local/netcdf/lib'

elif test -d /usr/local/include/netcdf.inc ; then

INCLUDES='-I/usr/local/include'

LIBS='-L/usr/local/lib64'

fi

MPI_HEADER_FILES='mpif.h mpif-mpi-io.h'

MPI_HEADER_FILES_INC='/usr/local/include/mpif.h
/usr/local/include/mpif-mpi-io.h'
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