[MITgcm-support] Compilation with pgi fortran

[Zhi-Ping Mei]

Hell all,

I am trying to compile MITgcm with PGI fortran. The compilation went fine and the binary mitgcmuv is generated.

However, when I run the binary, I got following error:

PGFIO-F-228/namelist read/unit=11/end of file reached without finding group.
 File name = /tmp/FTNcaaaaaDxah    formatted, sequential access   record = 85
 In source file ini_parms.f,PGFIO-F-228/namelist read/unit=11/end of file reached without finding group.
PGFIO-F-228/namelist read/unit=11/end of file reached without finding group.
PGFIO-F-228/namelist read/unit=11/end of file reached without finding group.
 at line number 3496
...

which appears to be related to reading 'data'

When I compiled with g77, I never encountered such problem. So I suspect it's related to compilation.

The following is the lines of build options:
===================================
#!/bin/bash
#
#  $Header: /u/gcmpack/MITgcm/tools/build_options/linux_ia32_pgf77+mpi,v 1.5 2004/09/25 00:42:14 heimbach Exp $
#

FC='mpif77'
CC='mpicc'
LINK='mpif77'
DEFINES='-DALLOW_USE_MPI -DALWAYS_USE_MPI -DWORDLENGTH=4'
CPP='cpp  -traditional -P'
INCLUDES='-I/usr/local/mpich/1.2.5/ip/up/pgi/ssh/include -I/usr/local/netcdf/pgi/include'
LIBS='-L/usr/local/mpich/1.2.5/ip/up/pgi/ssh/lib -lfmpich -lmpich -L/usr/local/netcdf/pgi/lib'

if test "x$IEEE" = x ; then
    #  No need for IEEE-754
    FFLAGS='-byteswapio -r8 -Mnodclchk -Mextend'
    FOPTIM='-fastsse -Mvect=cachesize:524288,transform'
else
    #  Try to follow IEEE-754
    FFLAGS='-byteswapio -r8 -Mnodclchk -Mextend'
    FOPTIM='-O0 -Mvect=sse -Mscalarsse -Mcache_align -Mnoflushz -Kieee'
fi

==================================================

and the following are the lines of job submission script:

``````````````````````````````````````````````````````````````````````````````````````````
#PBS -S /bin/bash
#PBS -N mitgcmuv
#PBS -l nodes=16:ppn=2
#PBS -l walltime=120:00:00
#PBS -o qsub.output
#PBS -j oe

# torch.mpi Last Modified Jan 16, 2008, Kristian Strickland

# Determine number of processors
NPROCS=`wc -l < $PBS_NODEFILE`

# Pad the log with extra info
echo "PBS: qsub was run on $PBS_O_HOST"
echo "PBS: job \"$PBS_JOBNAME\" submitted while in: $PBS_O_WORKDIR"
echo "PBS: submitted to queue: $PBS_O_QUEUE, execution in queue: $PBS_QUEUE"
echo "PBS: execution mode is $PBS_ENVIRONMENT"
echo "PBS: this job has allocated $NPROCS CPUs"
## Next two lines for debugging
#echo "PBS: node file is $PBS_NODEFILE and contains one CPU per node listed:"
#echo `cat $PBS_NODEFILE`
echo "PBS: PATH = $PBS_O_PATH"
echo ----------------------------------------

export MPICH="/usr/local/mpich/1.2.5/ip/up/pgi/ssh"
export MPICH_PATH="${MPICH}/bin"
export MPICH_LIB="${MPICH}/lib"
export PATH="${MPICH_PATH}:${PATH}"
export LD_LIBRARY_PATH="${MPICH_LIB}:${LD_LIBRARY_PATH}"

cd $PBS_O_WORKDIR    

# Run the parallel MPI executable "a.out"
mpirun -machinefile ${PBS_NODEFILE} -np $NPROCS  ./${PBS_JOBNAME} 

#>& out.dat
```````````````````````````````````````````````````````````````````

I appreciate someone who are familiar with compilation take a look and give me some advices. Thanks in advance,

Zhi-Ping

Mount Allison University
New Brunswick
Canda