[MITgcm-support] Compilation with pgi fortran

[Gus Correa]

Hello Zhi-Ping and list

Do you have this line on your build_options file,
to define "/" as the namelist terminator?

DEFINES='-DWORDLENGTH=4  -DNML_TERMINATOR=" /" '

(Wordlength=4 for me because I use a 32-bit machine.)

I hope it helps.
Gus Correa

-- 
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Gustavo J. Ponce Correa, PhD - Email: gus at ldeo.columbia.edu
Lamont-Doherty Earth Observatory - Columbia University
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Zhi-Ping Mei wrote:

>Hell all,
>
>I am trying to compile MITgcm with PGI fortran. The compilation went fine and the binary mitgcmuv is generated.
>
>However, when I run the binary, I got following error:
>
>PGFIO-F-228/namelist read/unit=11/end of file reached without finding group.
> File name = /tmp/FTNcaaaaaDxah    formatted, sequential access   record = 85
> In source file ini_parms.f,PGFIO-F-228/namelist read/unit=11/end of file reached without finding group.
>PGFIO-F-228/namelist read/unit=11/end of file reached without finding group.
>PGFIO-F-228/namelist read/unit=11/end of file reached without finding group.
> at line number 3496
>...
>
>which appears to be related to reading 'data'
>
>When I compiled with g77, I never encountered such problem. So I suspect it's related to compilation.
>
>The following is the lines of build options:
>===================================
>#!/bin/bash
>#
>#  $Header: /u/gcmpack/MITgcm/tools/build_options/linux_ia32_pgf77+mpi,v 1.5 2004/09/25 00:42:14 heimbach Exp $
>#
>
>FC='mpif77'
>CC='mpicc'
>LINK='mpif77'
>DEFINES='-DALLOW_USE_MPI -DALWAYS_USE_MPI -DWORDLENGTH=4'
>CPP='cpp  -traditional -P'
>INCLUDES='-I/usr/local/mpich/1.2.5/ip/up/pgi/ssh/include -I/usr/local/netcdf/pgi/include'
>LIBS='-L/usr/local/mpich/1.2.5/ip/up/pgi/ssh/lib -lfmpich -lmpich -L/usr/local/netcdf/pgi/lib'
>
>if test "x$IEEE" = x ; then
>    #  No need for IEEE-754
>    FFLAGS='-byteswapio -r8 -Mnodclchk -Mextend'
>    FOPTIM='-fastsse -Mvect=cachesize:524288,transform'
>else
>    #  Try to follow IEEE-754
>    FFLAGS='-byteswapio -r8 -Mnodclchk -Mextend'
>    FOPTIM='-O0 -Mvect=sse -Mscalarsse -Mcache_align -Mnoflushz -Kieee'
>fi
>
>==================================================
>
>and the following are the lines of job submission script:
>
>``````````````````````````````````````````````````````````````````````````````````````````
>#PBS -S /bin/bash
>#PBS -N mitgcmuv
>#PBS -l nodes=16:ppn=2
>#PBS -l walltime=120:00:00
>#PBS -o qsub.output
>#PBS -j oe
>
># torch.mpi Last Modified Jan 16, 2008, Kristian Strickland
>
># Determine number of processors
>NPROCS=`wc -l < $PBS_NODEFILE`
>
># Pad the log with extra info
>echo "PBS: qsub was run on $PBS_O_HOST"
>echo "PBS: job \"$PBS_JOBNAME\" submitted while in: $PBS_O_WORKDIR"
>echo "PBS: submitted to queue: $PBS_O_QUEUE, execution in queue: $PBS_QUEUE"
>echo "PBS: execution mode is $PBS_ENVIRONMENT"
>echo "PBS: this job has allocated $NPROCS CPUs"
>## Next two lines for debugging
>#echo "PBS: node file is $PBS_NODEFILE and contains one CPU per node listed:"
>#echo `cat $PBS_NODEFILE`
>echo "PBS: PATH = $PBS_O_PATH"
>echo ----------------------------------------
>
>export MPICH="/usr/local/mpich/1.2.5/ip/up/pgi/ssh"
>export MPICH_PATH="${MPICH}/bin"
>export MPICH_LIB="${MPICH}/lib"
>export PATH="${MPICH_PATH}:${PATH}"
>export LD_LIBRARY_PATH="${MPICH_LIB}:${LD_LIBRARY_PATH}"
>
>cd $PBS_O_WORKDIR    
>
># Run the parallel MPI executable "a.out"
>mpirun -machinefile ${PBS_NODEFILE} -np $NPROCS  ./${PBS_JOBNAME} 
>
>#>& out.dat
>```````````````````````````````````````````````````````````````````
>
>I appreciate someone who are familiar with compilation take a look and give me some advices. Thanks in advance,
>
>Zhi-Ping
>
>Mount Allison University
>New Brunswick
>Canda
>
>
>      
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>