[MITgcm-support] A simple question about MITgcm

[Yuan Lian]

Hi, Songjie,

Use "which makedepend" to check if you have installed it, typically
makedepend is under directory "/usr/X11R6/bin/", if you can't find it, you
can simply use makedepend under directory "/MITgcm/tools/cyrus-imapd-makedepend".
I have never tried this but it should work. For NetCDF parts, refer to
Ed's message in MITgcm-support Archives on Sep 24.

-Yuan

On Mon, 27 Sep 2004 song_jie at mail.iap.ac.cn wrote:

> Hi there:
>   I had ran the experiment of exp2 with optfile linux_ia32_g77 sucessfully.But the experiment of global_ocean.90x40x15 failed.There is two problem:
> 1. a system-defult makedepend was not found
> WARNING:unable to build cyrus-imapd-makedepend
>
> 2.WARNING: the "mnc" package has been enabled but tests failed to
>   compile and/or execute NetCDF applications.  Please check that:
>
>   1) NetCDF is installed for your compiler and
>   2) the LIBS variable (within the 'optfile") specifies the correct
>        NetCDF library to link against.
> Two experiments that I use the same optfile: linux_ia32_g77
>  I do had installed Netcdf in my computer but i don't know how to specify the correct Netcdf library.Could you show me an example in detail?
>           I am a freshman in linux .
>                       Thank you !
>                                                          songjie
>                                                             9.27
> My env is :
> PWD=/export/home/songjie
> MPI_HOME=/export/home/songjie/mpich
> MPSTKZ=100000000
> GM_ROOT=/export/gm
> PVM_ARCHCFLAGS=-I/export/gm/include
> REMOTEHOST=192.168.113.223
> PVM_ARCH=LINUXGM
> HOSTNAME=console
> PVM_ARCHLIB=/export/gm/binary/lib/libgm.a
> PVM_RSH=/usr/bin/rsh
> QTDIR=/usr/lib/qt3-gcc2.96
> OMP_NUM_THREADS=2
> CLASSPATH=/export/home/test1/intel/java/jdk1.2.2/bin:/export/home/test1/intel/guide40/class
> KMP_STACKSIZE=64M
> LANGUAGE=zh_CN.GB18030:zh_CN.GB2312:zh_CN
> LESSOPEN=|/usr/bin/lesspipe.sh %s
> XPVM_ROOT=/usr/share/pvm3/xpvm
> NETCDF=/export/netcdf-3.5.0--------------(There is where Netcdf be installed)
> USER=songjie
> LS_COLORS=no=00:fi=00:di=01;34:ln=01;36:pi=40;33:so=01;35:bd=40;33;01:cd=40;33;01:or=01;05;37;41:mi=01;05;37;41:ex=01;32:*.cmd=01;32:*.exe=01;32:*.com=01;32:*.btm=01;32:*.bat=01;32:*.sh=01;32:*.csh=01;32:*.tar=01;31:*.tgz=01;31:*.arj=01;31:*.taz=01;31:*.lzh=01;31:*.zip=01;31:*.z=01;31:*.Z=01;31:*.gz=01;31:*.bz2=01;31:*.bz=01;31:*.tz=01;31:*.rpm=01;31:*.cpio=01;31:*.jpg=01;35:*.gif=01;35:*.bmp=01;35:*.xbm=01;35:*.xpm=01;35:*.png=01;35:*.tif=01;35:
> MAIL=/var/spool/mail/songjie
> INPUTRC=/etc/inputrc
> GMPI_CONF=/export/home/test1/.gmpi/conf
> GM_HOME=/export/gm
> IFC=/export/intel/compiler80
> KAILMD_LICENSE_FILE=/export/home/test1/intel/kaplicense.data
> LANG=zh_CN.GB18030
> COLORTERM=vt100
> LOGNAME=songjie
> SHLVL=1
> F_UFMTENDIAN=big
> SHELL=/bin/bash
> HISTSIZE=1000
> PVM_ROOT=/export/pvm/pvm3-gm
> PGI=/export/pgi
> TERM=vt100
> HOME=/export/home/songjie
> SSH_ASKPASS=/usr/libexec/openssh/gnome-ssh-askpass
> PATH=.:/export/intel/compiler80/bin:/export/mpi/mpich-gm-ifc80/bin:/usr/local/bin:/bin:/usr/bin:/usr/X11R6/bin:/sbin:/usr/sbin:/export/pgi/linux86/bin/:/export/PBS/bin:/export/PBS/user-
> scripts:/export/home/test1/LICOM2.0/tool/grads/bin:/export/netcdf-3.5.0/bin:/export/netcdf-3.5.0/lib:/export/netcdf-3.5.0/include-----(Here is the PATH)
> MPICH=/export/mpi/mpich-gm-ifc80
> _=/usr/bin/env
>
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