[MITgcm-support] Biogeochemistry Simulation

[Dustin Carroll]

Hi Diego,

If you are using the stock 4.10 tutorial simulation, then you should have
binary diagnostics (*.data files)
generated that correspond to the settings in your data.diagnostics file.

You will need to load these as binary files in MATLAB (dimensions 128x64x15
for the 3-D fields, 32-bit)
>From there you can plot the fields using pcolor, imagesc, etc.

You can email me directly if you need some MATLAB code for this.

Best,
Dustin


On Sat, Jun 19, 2021 at 1:50 PM Diego Fernando Vázquez Diaz <
vzquez.dfd at gmail.com> wrote:

> Hi
> Thank you for your answer, the model to which I referred was that of 4.10
> Biogeochemistry Simulación, In the tutorial  do not specify how to
> configure it to make the graphs in matlab,  currently we already run the
> model and generate the output.txt file, just as the readme file says, but
> we are stuck in how to graph it in matlab. If they could help us in this
> part it would be very helpful
> Thank you very much for your attention
> Best regards
>
>
> El sáb., 19 de junio de 2021 3:37 p. m., Dustin Carroll <
> dcarroll at mlml.calstate.edu> escribió:
>
>> Hi Diego,
>>
>> You will need to run the MITgcm and generate the appropriate
>> diagnostic fields you wish to analyze
>> (or use publicly-available model output, such as ECCO):
>> https://www.ecco-group.org/
>>
>> You can then use the programming environment of your choice to
>> load binary or netCDF output and create visualizations.
>>
>> xmitgcm (python) or gcmfaces (MATLAB) are both nice packages
>> for loading, analyzing, and plotting MITgcm output (see links below).
>> Both packages provide a user guide / documentation.
>>
>> https://xmitgcm.readthedocs.io/en/latest/
>> https://github.com/MITgcm/gcmfaces
>>
>> Best,
>> Dustin
>>
>> On Sat, Jun 19, 2021 at 1:11 PM Diego Fernando Vázquez Diaz <
>> vzquez.dfd at gmail.com> wrote:
>>
>>> Good afternoon
>>> I am a student of the National Polytechnic Institute, Mexico City, I am
>>> currently studying the career of Geophysics, for the subject of Meteorology
>>> asked us to run one of their models, which is .. , currently we have the
>>> doubt, does the model have graphics? , if so help us to set it up for
>>> matlab
>>> I pay attention to your reply
>>> Greetings
>>> _______________________________________________
>>> MITgcm-support mailing list
>>> MITgcm-support at mitgcm.org
>>> http://mailman.mitgcm.org/mailman/listinfo/mitgcm-support
>>>
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