[MITgcm-support] problem compiling MITgcm with openmpi on mac big surr

Wed Jun 16 14:35:53 EDT 2021

Excellent!

On Wed, Jun 16, 2021 at 11:07 AM Mainak Mondal <mm10845 at nyu.edu> wrote:

> Hi all,
>
> Just to follow up :
>
> With Dustin's patch I was able to generate the executable mitgcmuv and it
> is working fine now.
>
> Thanks a lot .
>
> Cheers
>
>
> On Wed, Jun 16, 2021 at 6:09 PM Jeffery R Scott <jscott at mit.edu> wrote:
>
>> Hi Mainak,
>>
>>
>> Please continue to share your experiences with MITgcm on a M1 mac  - you
>> are a bit ahead of the curve here in
>>
>> terms of what we're supporting at this point.
>>
>>
>> Best,
>>
>> Jeff
>>
>>
>>
>> ------------------------------
>> *From:* MITgcm-support <mitgcm-support-bounces at mitgcm.org> on behalf of
>> Mainak Mondal <mm10845 at nyu.edu>
>> *Sent:* Wednesday, June 16, 2021 9:58 AM
>> *To:* mitgcm-support at mitgcm.org
>> *Subject:* Re: [MITgcm-support] problem compiling MITgcm with openmpi on
>> mac big surr
>>
>> Thanks Jean and Dustin.
>> On Wed, Jun 16, 2021 at 5:18 PM Dustin Carroll <
>> dcarroll at mlml.calstate.edu> wrote:
>>
>>> Hi Mainak,
>>>
>>> JMC: thanks for your comments here.
>>>
>>> I also ran into a similar problem when compiling MITgcm on my
>>> Macbook w/ the 10.15.7 Catalina upgrade.
>>>
>>> I fixed this by adding "#include <stdio.h>" to:
>>> /eesupp/src/setdir.c
>>>
>>> and adding the following lines to my optfile:
>>>
>>> FFLAGS="$FFLAGS -w -fallow-argument-mismatch -O2"
>>> FCFLAGS="$FCFLAGS -w -fallow-argument-mismatch -O2"
>>>
>>> Best,
>>> Dustin
>>>
>>> On Wed, Jun 16, 2021 at 5:17 AM Jean-Michel Campin <jmc at mit.edu> wrote:
>>>
>>>> Hi Mainak,
>>>>
>>>> I am not familiar with macbook, but the error you get might be
>>>> due to a recent version of gcc (10 or above) for which we need a patch
>>>> to the optfile,
>>>> as proposed by Gael Forget here:
>>>>  https://github.com/MITgcm/MITgcm/pull/480
>>>> <https://urldefense.proofpoint.com/v2/url?u=https-3A__github.com_MITgcm_MITgcm_pull_480&d=DwMFaQ&c=slrrB7dE8n7gBJbeO0g-IQ&r=ZvysV9sqKVa_ZzhPjngv7A&m=-6krWzaYhfDFZe5GZGpfvIMjmAhVO3v1BjE8STaN_BM&s=-sQexesGdxPZoN4TuLImRKBkgqjQBJiePAT4TQ0aSQQ&e=>
>>>>
>>>> There might be other issues but hard to tell since it fails to compile
>>>> early on because of this new gcc version.
>>>>
>>>> Also, I would suggest to try first without MPI to check that everything
>>>> is in place and once you pass this stage you can try again with MPI.
>>>>
>>>> Cheers,
>>>> Jean-Michel
>>>>
>>>> On Wed, Jun 16, 2021 at 10:11:06AM +0400, Mainak Mondal wrote:
>>>> > Hi,
>>>> >
>>>> > I recently tried installing MITgcm on macbook pro M1 with 8 core.
>>>> >
>>>> > I tried the followings:
>>>> >
>>>> > I installed openmpi, netcdf using Homebrew.
>>>> >
>>>> > %%%%%%%%%%%%%%%%%%%%%%
>>>> > checking for packages installed
>>>> > %%%%%%%%%%%%%%%%%%%%%
>>>> > pinta at Mainaks-MBP ~ % which gcc
>>>> > /usr/bin/gcc
>>>> > pinta at Mainaks-MBP ~ % which gfortran
>>>> > /opt/homebrew/bin/gfortran
>>>> > pinta at Mainaks-MBP ~ % which mpif90
>>>> > /opt/homebrew/bin/mpif90
>>>> > pinta at Mainaks-MBP ~ % which ncdump
>>>> > /opt/homebrew/bin/ncdump
>>>> > %%%%%%%%%%%%%%%%%%%%
>>>> >
>>>> > I downloaded the latest MITgcm
>>>> >
>>>> > I tried to compile MITgcm/verification/tutorial_plume_on_slope/ using
>>>> 8
>>>> > cores.
>>>> >
>>>> > %%%%%%%%%%%%%%%%%%%%
>>>> > initially while in the build directory, I ran
>>>> > pinta at Mainaks-MBP build % ../../../tools/genmake2 -mods=../code  -mpi
>>>> >
>>>> > It shows:
>>>> > The platform appears to be:  darwin_arm64
>>>> > Error: can't read
>>>> OPTFILE="../../../tools/build_options/darwin_arm64_mpif77"
>>>> >
>>>> > Then I tried with the optfile
>>>> > ../../../tools/genmake2 -mods=../code
>>>> > --optfile=../../../tools/build_options/darwin_amd64_gfortran -mpi
>>>> >
>>>> > I changed the followings:
>>>> > FC=mpif90
>>>> > commented out
>>>> > #FFLAGS="$FFLAGS -fconvert=big-endian"
>>>> >
>>>> > %%%%%%%%%%%%%%%%%%%%%%%%%%%
>>>> > while make depend , I got lots of warning messeges like:
>>>> >
>>>> > ./mpif.h:37:24: warning: missing terminating ' character
>>>> > [-Winvalid-pp-token]
>>>> > ! That being said, OMPI's "mpifort" wrapper compiler should
>>>> >
>>>> > %%%%%%%%%%%%%%%%%%%%%%%
>>>> >
>>>> > while doing make
>>>> >
>>>> > Error: Type mismatch between actual argument at (1) and actual
>>>> argument at
>>>> > (2) (INTEGER(4)/REAL(8)).
>>>> > cumulsum_z_tile.for:1193:27:
>>>> >
>>>> >  1164 |             CALL MPI_RECV (ready_to_receive, 1, MPI_INTEGER,
>>>> >       |                           2
>>>> > ......
>>>> >  1193 |             CALL MPI_RECV (loc2Buf, lbuf2,
>>>> MPI_DOUBLE_PRECISION,
>>>> >       |                           1
>>>> > Error: Type mismatch between actual argument at (1) and actual
>>>> argument at
>>>> > (2) (REAL(8)/INTEGER(4)).
>>>> > make[1]: *** [cumulsum_z_tile.o] Error 1
>>>> > make[1]: *** Waiting for unfinished jobs....
>>>> > make: *** [fwd_exe_target] Error 2
>>>> >
>>>> >
>>>> > I would really appreciate it if anyone can help me.
>>>> >
>>>> > Regards
>>>> > --
>>>> > *Mainak Mondal*
>>>> > Post-Doctoral Associate
>>>> > A2 104-C
>>>> > Center for Global Sea Level Change
>>>> > New York University Abu Dhabi
>>>> > ph: +971 26285339
>>>>
>>>> > _______________________________________________
>>>> > MITgcm-support mailing list
>>>> > MITgcm-support at mitgcm.org
>>>> > http://mailman.mitgcm.org/mailman/listinfo/mitgcm-support
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>>>>
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>>>>
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>>>
>>
>>
>> --
>> *Mainak Mondal*
>> Post-Doctoral Associate
>> A2 104-C
>> Center for Global Sea Level Change
>> New York University Abu Dhabi
>> ph: +971 26285339
>>
>> _______________________________________________
>> MITgcm-support mailing list
>> MITgcm-support at mitgcm.org
>>
>> https://urldefense.proofpoint.com/v2/url?u=http-3A__mailman.mitgcm.org_mailman_listinfo_mitgcm-2Dsupport&d=DwICAg&c=slrrB7dE8n7gBJbeO0g-IQ&r=ZvysV9sqKVa_ZzhPjngv7A&m=YnyeAzZbagrgXhkk9aw3fjbKQyRKiWNSfsrjzquXETE&s=eIXrF3HIgbVYljbXXFttpbRBrQgDjL4LhFCoiRvNNXg&e=
>>
>
>
> --
> *Mainak Mondal*
> Post-Doctoral Associate
> A2 104-C
> Center for Global Sea Level Change
> New York University Abu Dhabi
> ph: +971 26285339
>
> _______________________________________________
> MITgcm-support mailing list
> MITgcm-support at mitgcm.org
> http://mailman.mitgcm.org/mailman/listinfo/mitgcm-support
>
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