[MITgcm-support] problem compiling MITgcm with openmpi on mac big surr
Mainak Mondal
mm10845 at nyu.edu
Wed Jun 16 14:06:48 EDT 2021
Hi all,
Just to follow up :
With Dustin's patch I was able to generate the executable mitgcmuv and it
is working fine now.
Thanks a lot .
Cheers
On Wed, Jun 16, 2021 at 6:09 PM Jeffery R Scott <jscott at mit.edu> wrote:
> Hi Mainak,
>
>
> Please continue to share your experiences with MITgcm on a M1 mac - you
> are a bit ahead of the curve here in
>
> terms of what we're supporting at this point.
>
>
> Best,
>
> Jeff
>
>
>
> ------------------------------
> *From:* MITgcm-support <mitgcm-support-bounces at mitgcm.org> on behalf of
> Mainak Mondal <mm10845 at nyu.edu>
> *Sent:* Wednesday, June 16, 2021 9:58 AM
> *To:* mitgcm-support at mitgcm.org
> *Subject:* Re: [MITgcm-support] problem compiling MITgcm with openmpi on
> mac big surr
>
> Thanks Jean and Dustin.
> On Wed, Jun 16, 2021 at 5:18 PM Dustin Carroll <dcarroll at mlml.calstate.edu>
> wrote:
>
>> Hi Mainak,
>>
>> JMC: thanks for your comments here.
>>
>> I also ran into a similar problem when compiling MITgcm on my
>> Macbook w/ the 10.15.7 Catalina upgrade.
>>
>> I fixed this by adding "#include <stdio.h>" to:
>> /eesupp/src/setdir.c
>>
>> and adding the following lines to my optfile:
>>
>> FFLAGS="$FFLAGS -w -fallow-argument-mismatch -O2"
>> FCFLAGS="$FCFLAGS -w -fallow-argument-mismatch -O2"
>>
>> Best,
>> Dustin
>>
>> On Wed, Jun 16, 2021 at 5:17 AM Jean-Michel Campin <jmc at mit.edu> wrote:
>>
>>> Hi Mainak,
>>>
>>> I am not familiar with macbook, but the error you get might be
>>> due to a recent version of gcc (10 or above) for which we need a patch
>>> to the optfile,
>>> as proposed by Gael Forget here:
>>> https://github.com/MITgcm/MITgcm/pull/480
>>> <https://urldefense.proofpoint.com/v2/url?u=https-3A__github.com_MITgcm_MITgcm_pull_480&d=DwMFaQ&c=slrrB7dE8n7gBJbeO0g-IQ&r=ZvysV9sqKVa_ZzhPjngv7A&m=-6krWzaYhfDFZe5GZGpfvIMjmAhVO3v1BjE8STaN_BM&s=-sQexesGdxPZoN4TuLImRKBkgqjQBJiePAT4TQ0aSQQ&e=>
>>>
>>> There might be other issues but hard to tell since it fails to compile
>>> early on because of this new gcc version.
>>>
>>> Also, I would suggest to try first without MPI to check that everything
>>> is in place and once you pass this stage you can try again with MPI.
>>>
>>> Cheers,
>>> Jean-Michel
>>>
>>> On Wed, Jun 16, 2021 at 10:11:06AM +0400, Mainak Mondal wrote:
>>> > Hi,
>>> >
>>> > I recently tried installing MITgcm on macbook pro M1 with 8 core.
>>> >
>>> > I tried the followings:
>>> >
>>> > I installed openmpi, netcdf using Homebrew.
>>> >
>>> > %%%%%%%%%%%%%%%%%%%%%%
>>> > checking for packages installed
>>> > %%%%%%%%%%%%%%%%%%%%%
>>> > pinta at Mainaks-MBP ~ % which gcc
>>> > /usr/bin/gcc
>>> > pinta at Mainaks-MBP ~ % which gfortran
>>> > /opt/homebrew/bin/gfortran
>>> > pinta at Mainaks-MBP ~ % which mpif90
>>> > /opt/homebrew/bin/mpif90
>>> > pinta at Mainaks-MBP ~ % which ncdump
>>> > /opt/homebrew/bin/ncdump
>>> > %%%%%%%%%%%%%%%%%%%%
>>> >
>>> > I downloaded the latest MITgcm
>>> >
>>> > I tried to compile MITgcm/verification/tutorial_plume_on_slope/ using 8
>>> > cores.
>>> >
>>> > %%%%%%%%%%%%%%%%%%%%
>>> > initially while in the build directory, I ran
>>> > pinta at Mainaks-MBP build % ../../../tools/genmake2 -mods=../code -mpi
>>> >
>>> > It shows:
>>> > The platform appears to be: darwin_arm64
>>> > Error: can't read
>>> OPTFILE="../../../tools/build_options/darwin_arm64_mpif77"
>>> >
>>> > Then I tried with the optfile
>>> > ../../../tools/genmake2 -mods=../code
>>> > --optfile=../../../tools/build_options/darwin_amd64_gfortran -mpi
>>> >
>>> > I changed the followings:
>>> > FC=mpif90
>>> > commented out
>>> > #FFLAGS="$FFLAGS -fconvert=big-endian"
>>> >
>>> > %%%%%%%%%%%%%%%%%%%%%%%%%%%
>>> > while make depend , I got lots of warning messeges like:
>>> >
>>> > ./mpif.h:37:24: warning: missing terminating ' character
>>> > [-Winvalid-pp-token]
>>> > ! That being said, OMPI's "mpifort" wrapper compiler should
>>> >
>>> > %%%%%%%%%%%%%%%%%%%%%%%
>>> >
>>> > while doing make
>>> >
>>> > Error: Type mismatch between actual argument at (1) and actual
>>> argument at
>>> > (2) (INTEGER(4)/REAL(8)).
>>> > cumulsum_z_tile.for:1193:27:
>>> >
>>> > 1164 | CALL MPI_RECV (ready_to_receive, 1, MPI_INTEGER,
>>> > | 2
>>> > ......
>>> > 1193 | CALL MPI_RECV (loc2Buf, lbuf2,
>>> MPI_DOUBLE_PRECISION,
>>> > | 1
>>> > Error: Type mismatch between actual argument at (1) and actual
>>> argument at
>>> > (2) (REAL(8)/INTEGER(4)).
>>> > make[1]: *** [cumulsum_z_tile.o] Error 1
>>> > make[1]: *** Waiting for unfinished jobs....
>>> > make: *** [fwd_exe_target] Error 2
>>> >
>>> >
>>> > I would really appreciate it if anyone can help me.
>>> >
>>> > Regards
>>> > --
>>> > *Mainak Mondal*
>>> > Post-Doctoral Associate
>>> > A2 104-C
>>> > Center for Global Sea Level Change
>>> > New York University Abu Dhabi
>>> > ph: +971 26285339
>>>
>>> > _______________________________________________
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>>>
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>>
>
>
> --
> *Mainak Mondal*
> Post-Doctoral Associate
> A2 104-C
> Center for Global Sea Level Change
> New York University Abu Dhabi
> ph: +971 26285339
>
> _______________________________________________
> MITgcm-support mailing list
> MITgcm-support at mitgcm.org
>
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>
--
*Mainak Mondal*
Post-Doctoral Associate
A2 104-C
Center for Global Sea Level Change
New York University Abu Dhabi
ph: +971 26285339
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