[MITgcm-support] jobs died suddenly
Matthew Mazloff
mmazloff at ucsd.edu
Wed Mar 25 16:06:38 EDT 2020
Hello
The code crashed trying to read a file. The file is size NY*NZ*NT so I suspect it is an eastern or western boundary condition file. Make sure your files are long enough.
-Matt
> On Mar 25, 2020, at 12:24 PM, Yangxin He <y67he at uwaterloo.ca> wrote:
>
> Hello there,
>
> Recently several jobs of mine died of no reason. The error message is
> [y67he at gra-login1 b6]$ more sim-29315632.err
> ABNORMAL END: S/R MDS_READ_SEC_YZ
> srun: Job step aborted: Waiting up to 62 seconds for job step to finish.
> slurmstepd: error: *** JOB 29315632 ON gra228 CANCELLED AT 2020-03-25T08:30:08 DUE TO TIME LIMIT ***
> slurmstepd: error: *** STEP 29315632.0 ON gra228 CANCELLED AT 2020-03-25T08:30:08 DUE TO TIME LIMIT ***
> The time limit was not the problem. The code simply stopped producing any new results, however, it was still running.
> This is confusing, because I have been using the same set up for a while and this only started to happen in the past few weeks.
>
> I ran my code on graham in compute Canada, and the people there suggested it may be the problem in the code.
> Can anyone shed any lights on this?
>
> Thanks
>
> Yangxin
> _______________________________________________
> MITgcm-support mailing list
> MITgcm-support at mitgcm.org <mailto:MITgcm-support at mitgcm.org>
> http://mailman.mitgcm.org/mailman/listinfo/mitgcm-support <http://mailman.mitgcm.org/mailman/listinfo/mitgcm-support>
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://mailman.mitgcm.org/pipermail/mitgcm-support/attachments/20200325/6c8ef487/attachment.html>
More information about the MITgcm-support
mailing list