<html><head><meta http-equiv="Content-Type" content="text/html; charset=us-ascii"></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; line-break: after-white-space;" class="">Hello<div class=""><br class=""></div><div class="">The code crashed trying to read a file. The file is size NY*NZ*NT so I suspect it is an eastern or western boundary condition file. Make sure your files are long enough.</div><div class=""><br class=""></div><div class="">-Matt</div><div class=""><br class=""><div><br class=""><blockquote type="cite" class=""><div class="">On Mar 25, 2020, at 12:24 PM, Yangxin He <<a href="mailto:y67he@uwaterloo.ca" class="">y67he@uwaterloo.ca</a>> wrote:</div><br class="Apple-interchange-newline"><div class=""><div id="divtagdefaultwrapper" dir="ltr" style="caret-color: rgb(0, 0, 0); font-style: normal; font-variant-caps: normal; font-weight: normal; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; text-decoration: none; font-size: 12pt; font-family: Calibri, Helvetica, sans-serif;" class=""><div style="margin-top: 0px; margin-bottom: 0px;" class="">Hello there,</div><div style="margin-top: 0px; margin-bottom: 0px;" class=""><br class=""></div><div style="margin-top: 0px; margin-bottom: 0px;" class="">Recently several jobs of mine died of no reason. The error message is</div><div style="margin: 0px; font-stretch: normal; font-size: 12px; line-height: normal; font-family: Courier; color: rgb(255, 238, 149); background-color: rgb(21, 102, 47);" class=""><span style="font-variant-ligatures: no-common-ligatures;" class="">[y67he@gra-login1 b6]$ more sim-29315632.err </span></div><div style="margin: 0px; font-stretch: normal; font-size: 12px; line-height: normal; font-family: Courier; color: rgb(255, 238, 149); background-color: rgb(21, 102, 47);" class=""><span style="font-variant-ligatures: no-common-ligatures;" class="">ABNORMAL END: S/R MDS_READ_SEC_YZ</span></div><div style="margin: 0px; font-stretch: normal; font-size: 12px; line-height: normal; font-family: Courier; color: rgb(255, 238, 149); background-color: rgb(21, 102, 47);" class=""><span style="font-variant-ligatures: no-common-ligatures;" class="">srun: Job step aborted: Waiting up to 62 seconds for job step to finish.</span></div><div style="margin: 0px; font-stretch: normal; font-size: 12px; line-height: normal; font-family: Courier; color: rgb(255, 238, 149); background-color: rgb(21, 102, 47);" class=""><span style="font-variant-ligatures: no-common-ligatures;" class="">slurmstepd: error: *** JOB 29315632 ON gra228 CANCELLED AT 2020-03-25T08:30:08 DUE TO TIME LIMIT ***</span></div><p style="margin-top: 0px; margin-bottom: 0px;" class=""></p><div style="margin: 0px; font-stretch: normal; font-size: 12px; line-height: normal; font-family: Courier; color: rgb(255, 238, 149); background-color: rgb(21, 102, 47);" class=""><span style="font-variant-ligatures: no-common-ligatures;" class="">slurmstepd: error: *** STEP 29315632.0 ON gra228 CANCELLED AT 2020-03-25T08:30:08 DUE TO TIME LIMIT ***</span></div><div style="margin-top: 0px; margin-bottom: 0px;" class="">The time limit was not the problem. The code simply stopped producing any new results, however, it was still running.</div><div style="margin-top: 0px; margin-bottom: 0px;" class="">This is confusing, because I have been using the same set up for a while and this only started to happen in the past few weeks.</div><div style="margin-top: 0px; margin-bottom: 0px;" class=""><br class=""></div><div style="margin-top: 0px; margin-bottom: 0px;" class="">I ran my code on graham in compute Canada, and the people there suggested it may be the problem in the code.</div><div style="margin-top: 0px; margin-bottom: 0px;" class="">Can anyone shed any lights on this?</div><div style="margin-top: 0px; margin-bottom: 0px;" class=""><br class=""></div><div style="margin-top: 0px; margin-bottom: 0px;" class="">Thanks</div><div style="margin-top: 0px; margin-bottom: 0px;" class=""><br class=""></div><div style="margin-top: 0px; margin-bottom: 0px;" class="">Yangxin</div></div><span style="caret-color: rgb(0, 0, 0); font-family: Helvetica; font-size: 12px; font-style: normal; font-variant-caps: normal; font-weight: normal; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; text-decoration: none; float: none; display: inline !important;" class="">_______________________________________________</span><br style="caret-color: rgb(0, 0, 0); font-family: Helvetica; font-size: 12px; font-style: normal; font-variant-caps: normal; font-weight: normal; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; text-decoration: none;" class=""><span style="caret-color: rgb(0, 0, 0); font-family: Helvetica; font-size: 12px; font-style: normal; font-variant-caps: normal; font-weight: normal; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; text-decoration: none; float: none; display: inline !important;" class="">MITgcm-support mailing list</span><br style="caret-color: rgb(0, 0, 0); font-family: Helvetica; font-size: 12px; font-style: normal; font-variant-caps: normal; font-weight: normal; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; text-decoration: none;" class=""><a href="mailto:MITgcm-support@mitgcm.org" style="font-family: Helvetica; font-size: 12px; font-style: normal; font-variant-caps: normal; font-weight: normal; letter-spacing: normal; orphans: auto; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; widows: auto; word-spacing: 0px; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px;" class="">MITgcm-support@mitgcm.org</a><br style="caret-color: rgb(0, 0, 0); font-family: Helvetica; font-size: 12px; font-style: normal; font-variant-caps: normal; font-weight: normal; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; text-decoration: none;" class=""><a href="http://mailman.mitgcm.org/mailman/listinfo/mitgcm-support" style="font-family: Helvetica; font-size: 12px; font-style: normal; font-variant-caps: normal; font-weight: normal; letter-spacing: normal; orphans: auto; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; widows: auto; word-spacing: 0px; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px;" class="">http://mailman.mitgcm.org/mailman/listinfo/mitgcm-support</a></div></blockquote></div><br class=""></div></body></html>