[MITgcm-support] mpi run with cpu more than 9999

Jean-Michel Campin jmc at mit.edu
Tue Mar 10 15:26:02 EDT 2020


Hi Daquan,

Regarding STDOUT & STDERR files, you are right, this need to be fixed.
Until now, the only time MITgcm has been run using more than 10000 procs
was with  #define SINGLE_DISK_IO (in CPP_EEOPTIONS.h).
You might want to give it a try ?

But regarding "scratch" files, the ones that are used to copy any parameter
file (eedata, data and all data.* ) should have nine digits (FMT_PROC_ID = 'I9.9')
for the proc number so it should be OK.
May be our scratch file problem is coming from a different place ?

Cheers,
Jean-Michel

On Tue, Mar 10, 2020 at 04:59:52PM +0100, Martin Losch wrote:
> Hi Daquan,
> 
> I have no experience with so many processors. I assume that there will be plenty of problems with order 1e4 files open (depending on your file system), but you can fix the ???*****??? problem by changing the definitions in eesupp/src/eeboot_minimal.F:
> Look for ???USE_PDAF??? to see how the names of STDERR and STDOUT are changed to have longer numbers and do something similar for the default case.
> 
> Alternatively you can define SINGLE_DISK_IO, but then only process 0 (0000) will write a STDOUT/STDERR pair.
> 
> Martin
> 
> > On 10. Mar 2020, at 12:52, Daquan Guo <Daquan.Guo at kaust.edu.sa> wrote:
> > 
> > Dear mitgcm community and developers,
> > 
> > I am running a case with 16650 cpus and facing a problem. 
> > It seems the files scratch.*, STDERR.* and STDOUT.* can not be written well if the number exceeds 9999, instead it generates one file named 'scratch.****', which can not be read and processed then the model crashed. 
> > I am wondering if anyone has experience on this and knows how to fix it?
> > Thanks in advance.
> > 
> > Best,
> > Daquan
> > 
> >   
> > 
> > 
> > 
> > 
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