[MITgcm-support] No output every 4th depth

[Mari Fjalstad Jensen]

Hi Martin,
That was a great wild guess; it worked! Thanks a lot!
Mari

Den 2018-11-15 12:27 skreiv Martin Losch:
> Hi Mari,
> 
> this is a wild guess: In my intel (ifort) opt files, I always have the
> combination of “FFLAGS=$FFLAGS -assume byterecl” with
> "DEFINES='-DWORDLENGTH=4’"
> 
> btw, you don’t need '-DALLOW_USE_MPI -DALWAYS_USE_MPI’, you just need
> to specify "genmake2 -mpi”
> 
> Martin
> 
>> On 14. Nov 2018, at 22:32, Mari Fjalstad Jensen <Mari.F.Jensen at uib.no> 
>> wrote:
>> 
>> Dear all,
>> I've recently moved an existing setup with MITgcm to a new machine. I 
>> got the model up and running, and the surface ouput looks reasonable, 
>> but I only get ouput at every forth depth. The problem is already in 
>> setting up the grid. dRC etc looks fine, but hFacC and similar has a 
>> zero at every forth depth.
>> The depth.data-output looks like the bathymetry input I give it, so I 
>> don't think there is a problem with reading input files. SIZE.h looks 
>> correct too.
>> I use the same data-file and input as in a previous setup on a 
>> different machine, which works fine. Anyway, I've pasted in the 
>> data-file, and the build-options (which is what is changed from the 
>> other machine)
>> Anyone know what the problem could be?
>> 
>> Thanks for any advice!
>> Mari
>> 
>> build options:
>> 
>> FC=mpiifort
>> CC=mpiicc
>> LINK=$FC
>> DEFINES='-DWORDLENGTH=4 -DALLOW_USE_MPI -DALWAYS_USE_MPI'
>> CPP='cpp  -traditional -P'
>> NOOPTFLAGS='-O0'
>> INCLUDES="-I${NETCDF_DIR}/include 
>> -I/opt/cray/mpt/7.1.2/gni/mpich2-pgi/141/include"
>> 
>> # NetCDF not in use at this time
>>    FFLAGS=" -g -r8 -extend_source 132 -convert big_endian"
>>    FOPTIM="-pc=64 -O2"
>> 
>> 
>> data:
>> 
>> # Continuous equation parameters
>> &PARM01
>> tRef=30*6.0,
>> sRef=30*35.0,
>> viscAz=1.E-5,
>> # viscAh=20.,
>> # viscA4=1.e+9,
>> viscC2Smag=2.5,
>> no_slip_sides=.TRUE.,
>> no_slip_bottom=.TRUE.,
>> # diffK4T=1.e+9,
>> # diffKhT=30.,
>> diffKzT=1.E-5,
>> # diffK4S=1.e+9,
>> # diffKhS=30.,
>> diffKzS=1.E-5,
>> f0=1.2e-4,
>> beta=0.0E-11,
>> tAlpha=0.2E-3,
>> sBeta =0.8E-3,
>> rigidLid=.FALSE.,
>> implicitFreeSurface=.TRUE.,
>> staggerTimeStep=.TRUE.,
>> eosType='JMD95Z',
>> readBinaryPrec=32,
>> hFacMin=0.1,
>> bottomDragQuadratic=1.e-3,
>> implicitDiffusion=.TRUE.,
>> implicitViscosity=.TRUE.,
>> tempAdvScheme=33,
>> saltAdvScheme=33,
>> useSingleCpuIO=.TRUE.,
>> # vectorInvariantMomentum=.TRUE.,
>> ivdc_kappa=1000.0,
>> &
>> # Elliptic solver parameters
>> &PARM02
>> cg2dMaxIters=1000,
>> cg2dTargetResidual=1.E-11,
>> &
>> # Time stepping parameters
>> &PARM03
>> tauCD=0.,
>> nIter0=0.,
>> nTimeSteps=233280000,
>> # startTime=0.0,
>> # startTime=235872000,
>> # endTime=11.664e+8,
>> # endTime=3.1104e+7,
>> deltaT=400.0,
>> abEps=0.1,
>> pChkptFreq=0.0,
>> chkptFreq=31104000,
>> dumpFreq=2592000,
>> monitorFreq=2592000,
>> cAdjFreq=0,
>> forcing_In_AB=.FALSE.,
>> tauThetaClimRelax=0.0,
>> &
>> # Gridding parameters
>> &PARM04
>> usingCartesianGrid=.TRUE.,
>> usingSphericalPolarGrid=.FALSE.,
>> dXspacing=5.e+3,
>> dYspacing=5.e+3,
>> delZ=20*50,10*100,
>> &
>> &PARM05
>> checkIniTemp=.false.,
>> bathyFile='topog.bin',
>> &
>> 
>> 
>> 
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> 
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