[MITgcm-support] No output every 4th depth

[Mari Fjalstad Jensen]

Dear all,
I've recently moved an existing setup with MITgcm to a new machine. I 
got the model up and running, and the surface ouput looks reasonable, 
but I only get ouput at every forth depth. The problem is already in 
setting up the grid. dRC etc looks fine, but hFacC and similar has a 
zero at every forth depth.
The depth.data-output looks like the bathymetry input I give it, so I 
don't think there is a problem with reading input files. SIZE.h looks 
correct too.
I use the same data-file and input as in a previous setup on a different 
machine, which works fine. Anyway, I've pasted in the data-file, and the 
build-options (which is what is changed from the other machine)
Anyone know what the problem could be?

Thanks for any advice!
Mari

build options:

FC=mpiifort
CC=mpiicc
LINK=$FC
DEFINES='-DWORDLENGTH=4 -DALLOW_USE_MPI -DALWAYS_USE_MPI'
CPP='cpp  -traditional -P'
NOOPTFLAGS='-O0'
INCLUDES="-I${NETCDF_DIR}/include 
-I/opt/cray/mpt/7.1.2/gni/mpich2-pgi/141/include"

# NetCDF not in use at this time
     FFLAGS=" -g -r8 -extend_source 132 -convert big_endian"
     FOPTIM="-pc=64 -O2"


data:

# Continuous equation parameters
  &PARM01
  tRef=30*6.0,
  sRef=30*35.0,
  viscAz=1.E-5,
# viscAh=20.,
# viscA4=1.e+9,
  viscC2Smag=2.5,
  no_slip_sides=.TRUE.,
  no_slip_bottom=.TRUE.,
# diffK4T=1.e+9,
# diffKhT=30.,
  diffKzT=1.E-5,
# diffK4S=1.e+9,
# diffKhS=30.,
  diffKzS=1.E-5,
  f0=1.2e-4,
  beta=0.0E-11,
  tAlpha=0.2E-3,
  sBeta =0.8E-3,
  rigidLid=.FALSE.,
  implicitFreeSurface=.TRUE.,
  staggerTimeStep=.TRUE.,
  eosType='JMD95Z',
  readBinaryPrec=32,
  hFacMin=0.1,
  bottomDragQuadratic=1.e-3,
  implicitDiffusion=.TRUE.,
  implicitViscosity=.TRUE.,
  tempAdvScheme=33,
  saltAdvScheme=33,
  useSingleCpuIO=.TRUE.,
# vectorInvariantMomentum=.TRUE.,
  ivdc_kappa=1000.0,
  &
# Elliptic solver parameters
  &PARM02
  cg2dMaxIters=1000,
  cg2dTargetResidual=1.E-11,
  &
# Time stepping parameters
  &PARM03
  tauCD=0.,
  nIter0=0.,
  nTimeSteps=233280000,
# startTime=0.0,
# startTime=235872000,
# endTime=11.664e+8,
# endTime=3.1104e+7,
  deltaT=400.0,
  abEps=0.1,
  pChkptFreq=0.0,
  chkptFreq=31104000,
  dumpFreq=2592000,
  monitorFreq=2592000,
  cAdjFreq=0,
  forcing_In_AB=.FALSE.,
  tauThetaClimRelax=0.0,
  &
# Gridding parameters
  &PARM04
  usingCartesianGrid=.TRUE.,
  usingSphericalPolarGrid=.FALSE.,
  dXspacing=5.e+3,
  dYspacing=5.e+3,
  delZ=20*50,10*100,
  &
  &PARM05
  checkIniTemp=.false.,
  bathyFile='topog.bin',
  &