[MITgcm-support] release of xmitgcm v0.2.0
Angela Zalucha
azalucha at seti.org
Tue Feb 14 16:58:59 EST 2017
Ryan,
I know how to use Python, but haven't made the leap from my Matlab
MITgcm routines yet. I have a lot of output I need to look at, so this
is probably a good time to switch. I'll let you know how it works out.
Angela
On 02/14/2017 02:53 PM, Ryan Abernathey wrote:
> Hi Angela!
>
> Are you using python? Have you tried xmitgcm? Would love to get your
> feedback.
>
> Cheers,
> Ryan
>
> On Tue, Feb 14, 2017 at 4:10 PM, Angela Zalucha <azalucha at seti.org
> <mailto:azalucha at seti.org>> wrote:
>
> Thanks for this Ryan!
>
> =^^=|=^^=|=^^=|=^^=|=^^=|=^^=|=^^=
> Angela Zalucha, Ph.D.
> Research Scientist
> SETI Institute
> +1 (617) 894-2937 <tel:%28617%29%20894-2937>
> www.seti.org/users/azalucha <http://www.seti.org/users/azalucha>
> www.linkedin.com/in/angela-zalucha-57451749
> <http://www.linkedin.com/in/angela-zalucha-57451749>
> =^^=|=^^=|=^^=|=^^=|=^^=|=^^=|=^^=
>
> On Feb 14, 2017 12:28 PM, Ryan Abernathey
> <ryan.abernathey at gmail.com <mailto:ryan.abernathey at gmail.com>> wrote:
>
> Hello MITgcm Folks,
>
> I am happy to announce the release of xmitgcm v0.2.0.
> http://xmitgcm.readthedocs.io/en/latest/
> <http://xmitgcm.readthedocs.io/en/latest/>
> https://github.com/xgcm/xmitgcm <https://github.com/xgcm/xmitgcm>
>
> xmitgcm is a python package for reading MITgcm
> <http://mitgcm.org/public/r2_manual/latest/online_documents/node277.html> binary
> MDS files into xarray <http://xarray.pydata.org/> data
> structures. By storing data in dask <http://dask.pydata.org/>
> arrays, xmitgcm enables parallel, out-of-core
> <https://en.wikipedia.org/wiki/Out-of-core_algorithm> analysis
> of MITgcm output data.
>
> This release contains the following feature enhancements:
>
> * Files are not read until the data are accessed. This helps
> overcome a common “too many open files issue” (#11
> <https://github.com/xgcm/xmitgcm/issues/11>).
> * A workaround for missing .meta files (#12
> <https://github.com/xgcm/xmitgcm/issues/12>).
> * Option for a separate grid_dir in case it is different
> from data_dir (#13
> <https://github.com/xgcm/xmitgcm/issues/13>).
> * Refactor of the way LLC data is read which allows for more
> efficient chunking and lower memory usage (#20
> <https://github.com/xgcm/xmitgcm/issues/20>)
> * Bug fix related to the handling of default_dtype parameter
> (#34 <https://github.com/xgcm/xmitgcm/pull/34>). By
> Guillaume Sérazin <https://github.com/serazing>.
> * Support for older MITgcm versions that write a different
> lenght drC variable (#8
> <https://github.com/xgcm/xmitgcm/issues/8>). By Liam
> Brannigan <https://github.com/braaannigan>.
> * Support for cartesian curvilinear grids. By Andrea
> Cimatoribus <https://github.com/sambarluc>.
> * Expanded and improved documentation.
>
>
> I am very happy to see other MITgcm users using and
> contributing actively to xmitgcm.
>
> One major goal for this release was to improve the reading of
> LLC4320 files on pleiades. xmitgcm is now very efficient at
> extracting sub-regions from the LLC simulation. If you are
> interested in this topic, I encourage you to check out the
> documentation and performance analysis here:
> http://xmitgcm.readthedocs.io/en/latest/performance.html
> <http://xmitgcm.readthedocs.io/en/latest/performance.html>
>
> Installation instructions:
> http://xmitgcm.readthedocs.io/en/latest/
> <http://xmitgcm.readthedocs.io/en/latest/>
>
> Cheers,
> Ryan Abernathey
>
>
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>
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--
=^^=|=^^=|=^^=|=^^=|=^^=|=^^=|=^^=|=^^=|=^^=|=^^=|=^^=|=^^=
Angela Zalucha, Ph.D.
Research Scientist
SETI Institute
+1 (617) 894-2937
http://www.seti.org/users/azalucha
https://www.linkedin.com/in/angela-zalucha-57451749
=^^=|=^^=|=^^=|=^^=|=^^=|=^^=|=^^=|=^^=|=^^=|=^^=|=^^=|=^^=
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