[MITgcm-support] netcdf problems when running genmake

[Andreas Klocker]

Hi guys,

Maybe someone can help...

I'm trying to use genmake (see below) before compiling the MITgcm. For 
some reason I don't understand it has some issues with netcdf (again, 
see the genmake message below). This only started to be a problem recently.

A colleague of mine, running the same checkpoint (62), with the same 
opt-file, on the same machine, same netcdf_root, with the same modules 
loaded, does not have that problem. The same problem also appears with 
an older checkpoint.

Is there any way I can get a more detailed error log pointing me towards 
this problem? Or has anyone got any hints which might help? Without a 
more detailed error message I'm not sure where to start looking...even 
though I assume it's something trivial...

cheers,

Andreas



GENMAKE :

A program for GENerating MAKEfiles for the MITgcm project.
    For a quick list of options, use "genmake2 -h"
or for more detail see the Developer's HOWTO manual at:
    http://mitgcm.org/public/docs.html

===  Processing options files and arguments  ===
   getting local config information:  none found
Warning: ROOTDIR was not specified ; try using a local copy of MITgcm 
found at "../../.."
   getting OPTFILE information:
     using 
OPTFILE="../../../tools/build_options/linux_ia64_ifort+mpi_raijin"
   getting AD_OPTFILE information:
     using AD_OPTFILE="../../../tools/adjoint_options/adjoint_default"

===  Checking system libraries  ===
   Do we have the system() command using ifort...  no
   Do we have the fdate() command using ifort...  no
   Do we have the etime() command using ifort...  no
   Can we call simple C routines (here, "cloc()") using ifort... no
   Can we unlimit the stack size using ifort...  no
   Can we register a signal handler using ifort...  no
   Can we use stat() through C calls...  no
   Can we create NetCDF-enabled binaries...  no

===  Setting defaults  ===
   Adding MODS directories: ../code/
   Making source files in eesupp from templates
   Making source files in pkg/exch2 from templates
   Making source files in pkg/regrid from templates

===  Determining package settings  ===
   getting package dependency info from  ../../../pkg/pkg_depend
   getting package groups info from      ../../../pkg/pkg_groups
   checking list of packages to compile:
     using PKG_LIST="../code//packages.conf"
     before group expansion packages are: gfd ptracers diagnostics 
timeave mnc obcs layers kpp
     replacing "gfd" with:  mom_common mom_fluxform mom_vecinv 
generic_advdiff debug mdsio rw monitor
     after group expansion packages are:  mom_common mom_fluxform 
mom_vecinv generic_advdiff debug mdsio rw monitor ptracers diagnostics 
timeave mnc obcs layers kpp
   applying DISABLE settings
   applying ENABLE settings
     packages are:  debug diagnostics generic_advdiff kpp layers mdsio 
mnc mom_common mom_fluxform mom_vecinv monitor obcs ptracers rw timeave
*********************************************************************
WARNING: the "mnc" package was enabled but tests failed to compile
   NetCDF applications.  Please check that:

   1) NetCDF is correctly installed for this compiler and
   2) the LIBS variable (within the "optfile") specifies the correct
        NetCDF library to link against.

   Due to this failure, the "mnc" package is now DISABLED.
*********************************************************************
   applying package dependency rules
     packages are: debug diagnostics generic_advdiff kpp layers mdsio  
mom_common mom_fluxform mom_vecinv monitor obcs ptracers rw timeave
   Adding STANDARDDIRS='eesupp model'
   Searching for *OPTIONS.h files in order to warn about the presence
     of "#define "-type statements that are no longer allowed:
     found CPP_OPTIONS="./CPP_OPTIONS.h"
     found CPP_EEOPTIONS="./CPP_EEOPTIONS.h"
   Creating the list of files for the adjoint compiler.

===  Creating the Makefile  ===
   setting INCLUDES
   Determining the list of source and include files
   Writing makefile: Makefile
   Add the source list for AD code generation
   Making list of "exceptions" that need ".p" files
   Making list of NOOPTFILES
   Add rules for links
   Adding makedepend marker

===  Done  ===

-- 
===============================================================
Dr. Andreas Klocker
ARC Fellow (DECRA)

Institute for Marine and Antarctic Studies
University of Tasmania
20 Castray Esplanade
Battery Point, TAS
7004 Australia

M:     +61 437 870 182
W:     https://sites.google.com/site/andreasoceanographywebsite
skype: andiklocker
===============================================================



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