[MITgcm-support] MPI-Configuration on Westgrid (Jasper) Cluster

[Benjamin Ocampo]

Hi All:

I was wondering if anyone is familiar with making a build option for the
Jasper cluster as
my attempts are not working. The file I am currently made and using is of
the following:

module load library/openmpi/1.6.5-intel
module load library/netcdf/4.1.3
module load compiler/intel/13.0.1

FC=ifort
CC=icc

DEFINES='-DALLOW_USE_MPI -DALWAYS_USE_MPI -DWORDLENGTH=4'
CPP='/lib/cpp -traditional -P'
EXTENDED_SRC_FLAG='-132'
OMPFLAG='-openmp'
CFLAGS='-fPIC'
LDADD='-shared-intel'

LIBS='-L/global/software/openmpi/openmpi-1.6.5-intel/lib -lmpi
-L/global/software/netcdf/netcdf-4.1.3/lib -lnetcdf'
INCLUDES='-I/global/software/openmpi/openmpi-1.6.5-intel/include
-I/global/software/netcdf/netcdf-4.1.3/include'

NOOPTFLAGS='-O0'

FFLAGS="$FFLAGS -fPIC -W0 -WB -convert big_endian -assume byterecl -noalign"
FOPTIM='-O0'

And the errors that come out are of the following (First and last ten lines
of the error file):

debug_call.o: In function `debug_call_':
debug_call.f:(.text+0x98): undefined reference to `_gfortran_st_write'
debug_call.f:(.text+0xaa): undefined reference to
`_gfortran_transfer_character'
debug_call.f:(.text+0xb8): undefined reference to
`_gfortran_transfer_character'
debug_call.f:(.text+0xc0): undefined reference to `_gfortran_st_write_done'
debug_stats_rl.o: In function `debug_stats_rl_':
debug_stats_rl.f:(.text+0xfa): undefined reference to `_gfortran_st_write'
debug_stats_rl.f:(.text+0x10c): undefined reference to
`_gfortran_transfer_character'
debug_stats_rl.f:(.text+0x11c): undefined reference to
`_gfortran_transfer_character'
debug_stats_rl.f:(.text+0x12e): undefined reference to
`_gfortran_transfer_character'
...
# gfortran errors
...
/var/spool/torque/mom_priv/jobs/9036268.jasper-usradm.SC: line 29: cd:
/home/ocampo/MITgcm/verification/rotating_tank_mpi/run: No such file or
directory
ln: creating symbolic link `./CVS': File exists
--------------------------------------------------------------------------
mpiexec was unable to launch the specified application as it could not
access
or execute an executable:

Executable: ./mitgcmuv
Node: cl2n065

while attempting to start process rank 0.
--------------------------------------------------------------------------

I am also unfamiliar with where the gfortran errors come from. I am
assuming
it has to do with my path declaration but I am not sure. Any help in solving
this problem would be greatly appreciated. I will continue playing around
with
the pathways to see what is going on.

Cheers,
Benjamin
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