[MITgcm-support] eeset_parms.f and permissions error
Anthony Coletti
ajcolett at geo.umass.edu
Thu Jul 3 14:03:07 EDT 2014
Hi all,
Just a follow-up…It still keeps trying to access this directory. Does anyone know why this may be? I changed my .bash_profile (Jody’s suggestion) and this didn’t seem to help. (see email prior to this email)
If all else fails, I may have to email the engineers that run the supercomputer. I’ll keep working on the problem to see if I can figure this one out.
Anthony
Anthony J. Coletti
Climate System Research Center
Department of Geosciences
Morrill Building
611 N. Pleasant Street
233 Morrill Science Center
University of Massachusetts-Amherst
paleoclimate.org
Email: ajcolett at geo.umass.edu
http://blogs.umass.edu/ajcolett/
http://necsc.umass.edu/people/anthony-coletti
“For me, I am driven by two main philosophies: know more today about the world than I knew yesterday and lessen the suffering of others. You'd be surprised how far that gets you.” ― Neil deGrasse Tyson
On Jul 3, 2014, at 12:33 PM, Anthony Coletti <ajcolett at geo.umass.edu> wrote:
> Hi Jody,
>
> Thank you very much for your suggestion!
>
> I think I fixed that part of the issue. I made a /tmp/ directory in my home directory and set
>
> export TMPDIR=~/tmp/
>
> Once I try to run, I get this error:
>
> STOP ABNORMAL END: S/R INI_THREADING_ENVIRONMENT
>
> I’m assuming it has something to do with MPI. My SIZE.h file looks like this:
>
> & sNx = 4,
> & sNy = 4,
> & OLx = 4,
> & OLy = 4,
> & nSx = 6,
> & nSy = 1,
> & nPx = 8,
> & nPy = 8,
> & Nx = sNx*nSx*nPx,
> & Ny = sNy*nSy*nPy,
> & Nr = 15)
> I am running a 32x32x15 grid. Any suggestions on fixing this error or making my SIZE.h file more efficient?
>
> Thank you!
>
> Best,
> Anthony
>
> Anthony J. Coletti
> Climate System Research Center
> Department of Geosciences
> Morrill Building
> 611 N. Pleasant Street
> 233 Morrill Science Center
> University of Massachusetts-Amherst
> paleoclimate.org
> Email: ajcolett at geo.umass.edu
> http://blogs.umass.edu/ajcolett/
> http://necsc.umass.edu/people/anthony-coletti
>
> “For me, I am driven by two main philosophies: know more today about the world than I knew yesterday and lessen the suffering of others. You'd be surprised how far that gets you.” ― Neil deGrasse Tyson
>
>
>
>
> On Jul 3, 2014, at 11:01 AM, Klymak Jody <jklymak at uvic.ca> wrote:
>
>> Try setenv TMPDIR boo. Where boo is somewhere you have write permission for. Cheers. Jody
>>
>> Sent from my iPhone
>>
>> On Jul 3, 2014, at 6:21, Anthony Coletti <ajcolett at geo.umass.edu> wrote:
>>
>>> Hi all,
>>>
>>> I successfully compiled (with MPI) the MITgcm on NICS’s new System, Darter. Build and make operations go smoothly however when I submit the job to run and it initiates, it crashes ~ 6 seconds later with this strange error I have never seen before.
>>>
>>> Fortran runtime error: At line 1798 of file eeset_parms.f (unit = 11, file = 'H??')
>>> Permission denied trying to open file '/tmp/gfortrantmp7pxkF4'Fortran runtime error: Fortran runtime error: Permission denied trying to open file '/tmp/gfortrantmp059FE4'
>>> Permission denied trying to open file '/tmp/gfortrantmp77RFE4'
>>>
>>> At line 1798 of file eeset_parms.f (unit = 11, file = 'H??')
>>> Fortran runtime error: Permission denied trying to open file '/tmp/gfortrantmpSdSFE4'
>>> At line 1798 of file eeset_parms.f (unit = 11, file = 'H??')
>>> Fortran runtime error: Permission denied trying to open file '/tmp/gfortrantmpjePkF4'
>>> At line 1798 of file eeset_parms.f (unit = 11, file = 'H??')
>>> At line 1798 of file eeset_parms.f (unit = 11, file = 'H??')
>>> Fortran runtime error: Fortran runtime error: Permission denied trying to open file '/tmp/gfortrantmpwTYXca'Permission denied trying to open file '/tmp/gfortrantmpuafVca'
>>>
>>> At line 1798 of file eeset_parms.f (unit = 11, file = 'H??')
>>> Fortran runtime error: Permission denied trying to open file '/tmp/gfortrantmpAgnUca'
>>> At line 1798 of file eeset_parms.f (unit = 11, file = 'H??')
>>> At line 1798 of file eeset_parms.f (unit = 11, file = 'ȑ?')
>>> Fortran runtime error: Permission denied trying to open file '/tmp/gfortrantmpBRmUca'At line 1798 of file eeset_parms.f (unit = 11, file = 'H??')
>>> Fortran runtime error: Permission denied trying to open file '/tmp/gfortrantmp3kDSBN'
>>> At line 1798 of file eeset_parms.f (unit = 11, file = '??{')
>>> At line 1798 of file eeset_parms.f (unit = 11, file = 'H??')
>>> Fortran runtime error: Permission denied trying to open file '/tmp/gfortrantmpGzrSBN'
>>> At line 1798 of file eeset_parms.f (unit = 11, file = 'H??')
>>> Fortran runtime error: Permission denied trying to open file '/tmp/gfortrantmpSV9RBN'
>>> Fortran runtime error: At line 1798 of file eeset_parms.f (unit = 11, file = 'H??')
>>> Permission denied trying to open file '/tmp/gfortrantmpM17PBN'Fortran runtime error: Permission denied trying to open file '/tmp/gfortrantmp9eDSBN'At line 1798 of file eeset_parms.f (unit
>>> = 11, file = 'H??')
>>> At line 1798 of file eeset_parms.f (unit = 11, file = 'H??')
>>> Fortran runtime error: Fortran runtime error: Permission denied trying to open file '/tmp/gfortrantmpdSAdKY'Permission denied trying to open file '/tmp/gfortrantmpvXchKY'At line 1798 of f
>>> ile eeset_parms.f (unit = 11, file = 'H??')
>>>
>>> Fortran runtime error: Permission denied trying to open file '/tmp/gfortrantmpdJVgKY'
>>> At line 1798 of file eeset_parms.f (unit = 11, file = 'H??')
>>> Fortran runtime error: Permission denied trying to open file '/tmp/gfortrantmpLxVgKY'
>>> At line 1798 of file eeset_parms.f (unit = 11, file = 'H??')
>>> Fortran runtime error: Permission denied trying to open file '/tmp/gfortrantmp0MteKY'
>>> At line 1798 of file eeset_parms.f (unit = 11, file = 'H??')
>>> Fortran runtime error: Permission denied trying to open file '/tmp/gfortrantmp61EUca'Fortran runtime error:
>>> Permission denied trying to open file '/tmp/gfortrantmpnurVca'
>>> At line 1798 of file eeset_parms.f (unit = 11, file = 'H??')
>>> At line 1798 of file eeset_parms.f (unit = 11, file = 'H??')
>>> Fortran runtime error: Fortran runtime error: Permission denied trying to open file '/tmp/gfortrantmp7whYca'Permission denied trying to open file '/tmp/gfortrantmphozYca'
>>>
>>> At line 1798 of file eeset_parms.f (unit = 11, file = 'H??')
>>> At line 1798 of file eeset_parms.f (unit = 11, file = 'H??')
>>>
>>> Does anyone have any input on what could be causing this error? Is it a system problem rather than a GCM problem? Any and all help will be appreciated!
>>>
>>> Thanks,
>>> Anthony
>>>
>>> Anthony J. Coletti
>>> Climate System Research Center
>>> Department of Geosciences
>>> Morrill Building
>>> 611 N. Pleasant Street
>>> 233 Morrill Science Center
>>> University of Massachusetts-Amherst
>>> paleoclimate.org
>>> Email: ajcolett at geo.umass.edu
>>> http://blogs.umass.edu/ajcolett/
>>> http://necsc.umass.edu/people/anthony-coletti
>>>
>>> “For me, I am driven by two main philosophies: know more today about the world than I knew yesterday and lessen the suffering of others. You'd be surprised how far that gets you.” ― Neil deGrasse Tyson
>>>
>>>
>>>
>>>
>>> _______________________________________________
>>> MITgcm-support mailing list
>>> MITgcm-support at mitgcm.org
>>> http://mitgcm.org/mailman/listinfo/mitgcm-support
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