[MITgcm-support] eeset_parms.f and permissions error
Anthony Coletti
ajcolett at geo.umass.edu
Thu Jul 3 12:33:34 EDT 2014
Hi Jody,
Thank you very much for your suggestion!
I think I fixed that part of the issue. I made a /tmp/ directory in my home directory and set
export TMPDIR=~/tmp/
Once I try to run, I get this error:
STOP ABNORMAL END: S/R INI_THREADING_ENVIRONMENT
I’m assuming it has something to do with MPI. My SIZE.h file looks like this:
& sNx = 4,
& sNy = 4,
& OLx = 4,
& OLy = 4,
& nSx = 6,
& nSy = 1,
& nPx = 8,
& nPy = 8,
& Nx = sNx*nSx*nPx,
& Ny = sNy*nSy*nPy,
& Nr = 15)
I am running a 32x32x15 grid. Any suggestions on fixing this error or making my SIZE.h file more efficient?
Thank you!
Best,
Anthony
Anthony J. Coletti
Climate System Research Center
Department of Geosciences
Morrill Building
611 N. Pleasant Street
233 Morrill Science Center
University of Massachusetts-Amherst
paleoclimate.org
Email: ajcolett at geo.umass.edu
http://blogs.umass.edu/ajcolett/
http://necsc.umass.edu/people/anthony-coletti
“For me, I am driven by two main philosophies: know more today about the world than I knew yesterday and lessen the suffering of others. You'd be surprised how far that gets you.” ― Neil deGrasse Tyson
On Jul 3, 2014, at 11:01 AM, Klymak Jody <jklymak at uvic.ca> wrote:
> Try setenv TMPDIR boo. Where boo is somewhere you have write permission for. Cheers. Jody
>
> Sent from my iPhone
>
> On Jul 3, 2014, at 6:21, Anthony Coletti <ajcolett at geo.umass.edu> wrote:
>
>> Hi all,
>>
>> I successfully compiled (with MPI) the MITgcm on NICS’s new System, Darter. Build and make operations go smoothly however when I submit the job to run and it initiates, it crashes ~ 6 seconds later with this strange error I have never seen before.
>>
>> Fortran runtime error: At line 1798 of file eeset_parms.f (unit = 11, file = 'H??')
>> Permission denied trying to open file '/tmp/gfortrantmp7pxkF4'Fortran runtime error: Fortran runtime error: Permission denied trying to open file '/tmp/gfortrantmp059FE4'
>> Permission denied trying to open file '/tmp/gfortrantmp77RFE4'
>>
>> At line 1798 of file eeset_parms.f (unit = 11, file = 'H??')
>> Fortran runtime error: Permission denied trying to open file '/tmp/gfortrantmpSdSFE4'
>> At line 1798 of file eeset_parms.f (unit = 11, file = 'H??')
>> Fortran runtime error: Permission denied trying to open file '/tmp/gfortrantmpjePkF4'
>> At line 1798 of file eeset_parms.f (unit = 11, file = 'H??')
>> At line 1798 of file eeset_parms.f (unit = 11, file = 'H??')
>> Fortran runtime error: Fortran runtime error: Permission denied trying to open file '/tmp/gfortrantmpwTYXca'Permission denied trying to open file '/tmp/gfortrantmpuafVca'
>>
>> At line 1798 of file eeset_parms.f (unit = 11, file = 'H??')
>> Fortran runtime error: Permission denied trying to open file '/tmp/gfortrantmpAgnUca'
>> At line 1798 of file eeset_parms.f (unit = 11, file = 'H??')
>> At line 1798 of file eeset_parms.f (unit = 11, file = 'ȑ?')
>> Fortran runtime error: Permission denied trying to open file '/tmp/gfortrantmpBRmUca'At line 1798 of file eeset_parms.f (unit = 11, file = 'H??')
>> Fortran runtime error: Permission denied trying to open file '/tmp/gfortrantmp3kDSBN'
>> At line 1798 of file eeset_parms.f (unit = 11, file = '??{')
>> At line 1798 of file eeset_parms.f (unit = 11, file = 'H??')
>> Fortran runtime error: Permission denied trying to open file '/tmp/gfortrantmpGzrSBN'
>> At line 1798 of file eeset_parms.f (unit = 11, file = 'H??')
>> Fortran runtime error: Permission denied trying to open file '/tmp/gfortrantmpSV9RBN'
>> Fortran runtime error: At line 1798 of file eeset_parms.f (unit = 11, file = 'H??')
>> Permission denied trying to open file '/tmp/gfortrantmpM17PBN'Fortran runtime error: Permission denied trying to open file '/tmp/gfortrantmp9eDSBN'At line 1798 of file eeset_parms.f (unit
>> = 11, file = 'H??')
>> At line 1798 of file eeset_parms.f (unit = 11, file = 'H??')
>> Fortran runtime error: Fortran runtime error: Permission denied trying to open file '/tmp/gfortrantmpdSAdKY'Permission denied trying to open file '/tmp/gfortrantmpvXchKY'At line 1798 of f
>> ile eeset_parms.f (unit = 11, file = 'H??')
>>
>> Fortran runtime error: Permission denied trying to open file '/tmp/gfortrantmpdJVgKY'
>> At line 1798 of file eeset_parms.f (unit = 11, file = 'H??')
>> Fortran runtime error: Permission denied trying to open file '/tmp/gfortrantmpLxVgKY'
>> At line 1798 of file eeset_parms.f (unit = 11, file = 'H??')
>> Fortran runtime error: Permission denied trying to open file '/tmp/gfortrantmp0MteKY'
>> At line 1798 of file eeset_parms.f (unit = 11, file = 'H??')
>> Fortran runtime error: Permission denied trying to open file '/tmp/gfortrantmp61EUca'Fortran runtime error:
>> Permission denied trying to open file '/tmp/gfortrantmpnurVca'
>> At line 1798 of file eeset_parms.f (unit = 11, file = 'H??')
>> At line 1798 of file eeset_parms.f (unit = 11, file = 'H??')
>> Fortran runtime error: Fortran runtime error: Permission denied trying to open file '/tmp/gfortrantmp7whYca'Permission denied trying to open file '/tmp/gfortrantmphozYca'
>>
>> At line 1798 of file eeset_parms.f (unit = 11, file = 'H??')
>> At line 1798 of file eeset_parms.f (unit = 11, file = 'H??')
>>
>> Does anyone have any input on what could be causing this error? Is it a system problem rather than a GCM problem? Any and all help will be appreciated!
>>
>> Thanks,
>> Anthony
>>
>> Anthony J. Coletti
>> Climate System Research Center
>> Department of Geosciences
>> Morrill Building
>> 611 N. Pleasant Street
>> 233 Morrill Science Center
>> University of Massachusetts-Amherst
>> paleoclimate.org
>> Email: ajcolett at geo.umass.edu
>> http://blogs.umass.edu/ajcolett/
>> http://necsc.umass.edu/people/anthony-coletti
>>
>> “For me, I am driven by two main philosophies: know more today about the world than I knew yesterday and lessen the suffering of others. You'd be surprised how far that gets you.” ― Neil deGrasse Tyson
>>
>>
>>
>>
>> _______________________________________________
>> MITgcm-support mailing list
>> MITgcm-support at mitgcm.org
>> http://mitgcm.org/mailman/listinfo/mitgcm-support
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