[MITgcm-support] EXF and Calendar Package
Andres Fernandez
andres.fernandez at nyu.edu
Tue Aug 5 18:11:31 EDT 2014
Hi Martin, I have been trying to work off of global_with_exf .... Have
not succeeded yet.
Here is the link with my input directories and code directories:
https://www.dropbox.com/sh/l3ajr61zbb7v94u/AADX32m0dSoDj69apzgFlfvLa
Thank you in advance!
Andres
*Andres Fernandez*
Undergraduate Chemical Engineering
New York University Abu Dhabi - 2015
Mobile (USA): +1 646 717 2231
*Think before printing. The environment is in our hands
On Tue, Aug 5, 2014 at 2:27 AM, Martin Losch <Martin.Losch at awi.de> wrote:
> Hi Andres,
>
> dz(k+1)/dz(k) < sqrt(2) is a rule of thumb (that you should follow). The
> finite volume discretization requires some averaging to grid cell
> interfaces and currently (and I don't believe that this will change) this
> averaging requires that the grid spacing varies smoothly to avoid large
> discretrization errors. The same is true for the horizontal grid spacing,
> but in the horizontal very irregular grid appear unnatural, right?
>
> Can you gzip/tar your code and input directories and put them somewhere to
> download and look at (please don't send large files to this list)?
>
> For problems like yours, it makes sense to start from a working example
> and change it file by file to the actual configuration that you want to
> run, so that you can identify the problems individually.
>
> Martin
>
> On Aug 5, 2014, at 12:46 AM, Andres Fernandez <andres.fernandez at nyu.edu>
> wrote:
>
> > Data file, STDOUT.0000 and the .e file that is generated are attached...
> > the STDERR.0000 is blank, so i did not attach it.
> >
> > @Nicolas, I was not aware of this limitation of irregular spacing. Any
> comments from other users?
> >
> >
> > Thank you all!
> >
> >
> > Andres Fernandez
> > Undergraduate Chemical Engineering
> > New York University Abu Dhabi - 2015
> > Mobile (USA): +1 646 717 2231
> >
> > *Think before printing. The environment is in our hands
> >
> >
> >
> > On Mon, Aug 4, 2014 at 5:23 PM, Dustin Carroll <dcarroll at uoregon.edu>
> wrote:
> > Hi Andres,
> >
> > It would be helpful for you to share your data file...plus the last few
> lines from STDOUT.0000 and the output from STDERR.0000.
> >
> > Dustin
> >
> > On Aug 4, 2014, at 7:15 PM, Andres Fernandez <andres.fernandez at nyu.edu>
> wrote:
> >
> >> Dear Dustin,
> >> I realized I had a comma missing in the list when copying you the delR
> declaration. I have an irregular spacing declared as follows: So, thank
> you.
> >>
> >> delR= 5.0,
> >> 5.0,
> >> 5.0,
> >> 5.0,
> >> 5.0,
> >> 5.0,
> >> 5.0,
> >> 5.0,
> >> 5.0,
> >> 5.0,
> >> 10.0,
> >> 10.0,
> >> 10.0,
> >> 10.0,
> >> 10.0,
> >> 10.0,
> >> 10.0,
> >> 10.0,
> >> 10.0,
> >> 10.0,
> >> 50.0,
> >> 50.0,
> >> 50.0,
> >> 50.0,
> >> 50.0,
> >> &
> >>
> >>
> >>
> >>
> >> ** I do still get an error though!
> >>
> >> forrtl: severe (24): end-of-file during read, unit 11, file
> .../fortzlTn72 line 8, position 0
> >> "" ... / fort5xkez2
> >> "" .../ fort2YWOn2fort5xkez2
> >> and a bunch more files..
> >>
> >> Unsure if you could assist with this error?
> >>
> >> @Jean- Michel, I have ran a couple models before and the struggle I
> have right now is with external forcing, I want to add precipitation and
> evaporation and I am not succeeding. I have not found any comprehensive
> information on the manual.
> >>
> >>
> >>
> >> Andres Fernandez
> >> Undergraduate Chemical Engineering
> >> New York University Abu Dhabi - 2015
> >> Mobile (USA): +1 646 717 2231
> >>
> >> *Think before printing. The environment is in our hands
> >>
> >>
> >>
> >> On Mon, Aug 4, 2014 at 3:58 PM, Dustin Carroll <dcarroll at uoregon.edu>
> wrote:
> >> Hi Andres,
> >>
> >> The vertical grid spacing (delZ, delP, or delR) is set in your data
> file. You can specific with a *.bin file, i.e delRfile='dz. bin'
> >>
> >> or without a bin file...delR=100*10
> >>
> >> Cheers,
> >> Dustin
> >>
> >>
> >>
> >>
> >> On Aug 4, 2014, at 5:43 PM, Andres Fernandez <andres.fernandez at nyu.edu>
> wrote:
> >>
> >>> Dear support,
> >>>
> >>> I get the (PID.TID 0001.0001) *** ERROR *** S/R INI_PARMS: No value
> for delZ/delP/delR at k = 16 ....25
> >>> I am unsure where to set these initial conditions... or is this when I
> build it?
> >>>
> >>> Did I build it incorrectly?
> >>>
> >>> Thank you
> >>>
> >>> Andres Fernandez
> >>> Undergraduate Chemical Engineering
> >>> New York University Abu Dhabi - 2015
> >>> Mobile (USA): +1 646 717 2231
> >>>
> >>> *Think before printing. The environment is in our hands
> >>>
> >>>
> >>>
> >>> On Thu, Jul 31, 2014 at 8:34 PM, Dustin Carroll <dcarroll at uoregon.edu>
> wrote:
> >>> Hi Andres,
> >>>
> >>> You can debug this further by looking at your STDERR.0000 file for
> more specific error information... also take a look at STDOUT.0000 to see
> where your model crashed. You probably have a syntax error in one of your
> data files.
> >>>
> >>> Cheers,
> >>> Dustin
> >>>
> >>>
> >>> On Jul 31, 2014, at 9:21 PM, Andres Fernandez <
> andres.fernandez at nyu.edu> wrote:
> >>>
> >>>> So I recompiled the executable; and placed it in my input folder;
> >>>>
> >>>> I have the following folders:
> >>>>
> >>>> data
> >>>> data.cal
> >>>> data.exf
> >>>> data.obcs
> >>>> data.pkg
> >>>> data.rbcs
> >>>> eedata
> >>>> eedata.mth
> >>>> executable
> >>>> (some binary files)
> >>>>
> >>>> And I get this error when I run:
> >>>> ABNORMAL END: S/R INI_PARMS
> >>>>
> >>>> Thank you for your assistance.
> >>>>
> >>>>
> >>>> Best,
> >>>> Andres
> >>>>
> >>>> Andres Fernandez
> >>>> Mobile (USA): +1 646 717 2231
> >>>>
> >>>> *Think before printing. The environment is in our hands
> >>>>
> >>>>
> >>>>
> >>>> On Thu, Jul 31, 2014 at 3:46 PM, Dustin Carroll <dcarroll at uoregon.edu>
> wrote:
> >>>> Hi Andres,
> >>>>
> >>>> also, under code/packages.conf add the line:
> >>>>
> >>>> cal
> >>>>
> >>>> and recompile. Then you should be fine with useEXF=.TRUE., in your
> data.pkg file.
> >>>>
> >>>> Cheers,
> >>>>
> >>>>
> >>>> Dustin
> >>>>
> >>>> On Jul 31, 2014, at 3:53 PM, Andres Fernandez <
> andres.fernandez at nyu.edu> wrote:
> >>>>
> >>>>> Thank you!
> >>>>> So building a code with the following packages should allow me to
> use external forcing correctly?
> >>>>>
> >>>>> # Packages
> >>>>> &PACKAGES
> >>>>> useOBCS=.TRUE.,
> >>>>> usePtracers=.FALSE.,
> >>>>> useRBCS=.FALSE.,
> >>>>> useEXF=.TRUE.,
> >>>>> #useLayers=.TRUE.,
> >>>>> &
> >>>>>
> >>>>> Best,
> >>>>> Andres
> >>>>>
> >>>>> Andres Fernandez
> >>>>> Undergraduate Chemical Engineering
> >>>>> New York University Abu Dhabi - 2015
> >>>>> Mobile (USA): +1 646 717 2231
> >>>>>
> >>>>> *Think before printing. The environment is in our hands
> >>>>>
> >>>>>
> >>>>>
> >>>>> On Thu, Jul 31, 2014 at 12:08 PM, Jean-Michel Campin <
> jmc at ocean.mit.edu> wrote:
> >>>>> Hi Andres,
> >>>>>
> >>>>> Since pkg/exf requires the use of calendar package (pkg/cal),
> >>>>> this later (pkg/cal) is always compiled (MITgcm/pkg/pkg_depend)
> >>>>> and used (in: model/src/packages_boot.F: IF (useEXF) useCAL = .TRUE.)
> >>>>> anytime pkg/exf is compiled and used.
> >>>>>
> >>>>> Cheers,
> >>>>> Jean-Michel
> >>>>>
> >>>>> On Thu, Jul 31, 2014 at 11:30:08AM -0400, Andres Fernandez wrote:
> >>>>> > Dear MITgcm support,
> >>>>> >
> >>>>> > I have been trying to run the external forcing package; and I have
> yet to
> >>>>> > succeed, but I was wondering if a reason why it is not working is
> because I
> >>>>> > do not have the calendar package?
> >>>>> >
> >>>>> > Thank you,
> >>>>> >
> >>>>> > *Andres Fernandez*
> >>>>> > Mobile (USA): +1 646 717 2231
> >>>>> >
> >>>>> > *Think before printing. The environment is in our hands
> >>>>>
> >>>>> > _______________________________________________
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> >>>>>
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