[MITgcm-support] MITgcm 40km resolution Arctic simulation

Thu Oct 24 12:12:34 EDT 2013

I hope so. They have been very good to me in terms of their help (and I'm
sure I'll need it again in the future!!) so I hope I can be of help to
others [?]

Jonny

On 24 October 2013 17:09, F Monteiro <F.Monteiro at bristol.ac.uk> wrote:

> Hi Jonny,
>
> Thanks for giving access to your notes. It will be very helpful for the
> rest of the community.
>
> Cheers
> Fanny
>
>
>
> On 24 October 2013 17:01, Jonny Williams <Jonny.Williams at bristol.ac.uk>wrote:
>
>> Hi there
>>
>> I have put a detailed guide on how to get the Arctic regional model
>> working here<http://www.paleo.bris.ac.uk/~ggjhtw/MITgcm_cs_36km_guide.pdf>.
>> Many thanks again to many of you for your help, particularly Dimitris,
>> Patrick and Renske.
>>
>> Jonny
>>
>>
>> On 23 October 2013 18:30, Jonny Williams <Jonny.Williams at bristol.ac.uk>wrote:
>>
>>> Hi there
>>>
>>> Just to say that I now have this configuration working. I will post a
>>> detailed how-to tomorrow.
>>>
>>> Many thanks
>>>
>>> Jonny
>>>
>>>
>>> On 21 October 2013 17:45, Menemenlis, Dimitris (3248) <
>>> Dimitris.Menemenlis at jpl.nasa.gov> wrote:
>>>
>>>> Hi Jonny, the *.bin files are available here:
>>>> http://ecco2.jpl.nasa.gov/data1/arctic/run_template2/
>>>> I thought that you had already downloaded them?
>>>> As Patrick says, the CVS server only contains
>>>> code files you need to compile and the input
>>>> parameter files for running the code.  For the binary
>>>> files that specify grid configuration, surface
>>>> forcing, and boundary conditions, you can use the
>>>> ones from http://ecco2.jpl.nasa.gov/data1/arctic/run_template2/
>>>> and http://ecco2.jpl.nasa.gov/data2/data/atmos/
>>>>
>>>> I will try to check-in a readme file later today that makes this
>>>> explicit.
>>>>
>>>> Cheers
>>>>
>>>> Dimitris Menemenlis
>>>>
>>>> On Oct 21, 2013, at 9:33 AM, Patrick Heimbach wrote:
>>>>
>>>> > Hi Jonny,
>>>> >
>>>> > the model is looking for input fields.
>>>> > For "non-standard" experiments (i.e. that are not part of the
>>>> verification suite) and which are large, those fields are not placed in the
>>>> CVS repository (would be too large).
>>>> >
>>>> > We'll try to place the required input somewhere on the ECCO data
>>>> server. Watch this space (I need to find a spare moment...)
>>>> >
>>>> > -Patrick
>>>> >
>>>> > On Oct 21, 2013, at 9:20 AM, Jonny Williams <
>>>> Jonny.Williams at bristol.ac.uk> wrote:
>>>> >
>>>> >> and incidentally, I have done a "grep" on the whole cs_36km
>>>> directory and there appears to be no mention of any file called
>>>> "LONC.bin.data" so I am not sure why the code is looking for this?
>>>> >>
>>>> >> Thanks
>>>> >>
>>>> >> Jonny
>>>> >>
>>>> >>
>>>> >> On 21 October 2013 11:25, Jonny Williams <
>>>> Jonny.Williams at bristol.ac.uk> wrote:
>>>> >> Thanks a lot for this
>>>> >>
>>>> >> I've downloaded and compiled the job successfully but at run time I
>>>> get the following in the error file...
>>>> >>
>>>> >> Warning: ieee_inexact is signaling
>>>> >> ABNORMAL END: S/R MDS_READ_FIELD
>>>> >> [NID 02177] 2013-10-21 10:03:34 Apid 6025263: initiated application
>>>> termination
>>>> >>
>>>> >> ... which I assumer is due to the following in the STDERR.0000
>>>> file...
>>>> >>
>>>> >> (PID.TID 0000.0001) ** Warning ** DIAGNOSTICS_READPARMS: ignores
>>>> "data.diagnostics" file since
>>>> >> (PID.TID 0000.0001) ** Warning ** DIAGNOSTICS_READPARMS:
>>>> useDiagnostics= F (set from "data.pkg")
>>>> >> (PID.TID 0000.0001) ** WARNING ** INI_MODEL_IO: use tiled-files to
>>>> write sections (for OBCS)
>>>> >> (PID.TID 0000.0001) *** ERROR ***  MDS_READ_FIELD: filename:
>>>> LONC.bin.data
>>>> >> (PID.TID 0000.0001) *** ERROR ***  MDS_READ_FIELD: File does not
>>>> exist
>>>> >>
>>>> >> Indeed there is no LONC.bin.data file present in the input directory
>>>> so I assume this is the problem?
>>>> >>
>>>> >> Thanks again
>>>> >>
>>>> >> Jonny
>>>> >>
>>>> >>
>>>> >>
>>>> >>
>>>> >>
>>>> >>
>>>> >>
>>>> >> On 18 October 2013 22:12, Menemenlis, Dimitris (3248) <
>>>> Dimitris.Menemenlis at jpl.nasa.gov> wrote:
>>>> >> Jonny, hi again.  I did not get around to testing but Patrick
>>>> Heimbach kindly provided
>>>> >> a 36-km configuration that ran successfully in February.  I checked
>>>> it in under:
>>>> http://mitgcm.org/viewvc/MITgcm/MITgcm_contrib/arctic/cs_36km/
>>>> >>
>>>> >> I will try to take a quick look at it this weekend - but if you give
>>>> it a try first and it works,
>>>> >> let me know - or if there is still an error message or something
>>>> missing - reply to this
>>>> >> message, including mitgcm-support and we will try to help you.
>>>> >>
>>>> >> Cheers
>>>> >>
>>>> >> Dimitris Menemenlis
>>>> >>
>>>> >>
>>>> >>
>>>> >>
>>>> >> --
>>>> >> Dr Jonny Williams
>>>> >> School of Geographical Sciences
>>>> >> University of Bristol
>>>> >> University Road
>>>> >> BS8 1SS
>>>> >>
>>>> >> +44 (0)117 3318352
>>>> >> jonny.williams at bristol.ac.uk
>>>> >> bit.ly/jonnywilliams
>>>> >>
>>>> >>
>>>> >>
>>>> >> --
>>>> >> Dr Jonny Williams
>>>> >> School of Geographical Sciences
>>>> >> University of Bristol
>>>> >> University Road
>>>> >> BS8 1SS
>>>> >>
>>>> >> +44 (0)117 3318352
>>>> >> jonny.williams at bristol.ac.uk
>>>> >> bit.ly/jonnywilliams
>>>> >> _______________________________________________
>>>> >> MITgcm-support mailing list
>>>> >> MITgcm-support at mitgcm.org
>>>> >> http://mitgcm.org/mailman/listinfo/mitgcm-support
>>>> >
>>>> >
>>>> > ---
>>>> > Patrick Heimbach | heimbach at mit.edu | http://www.mit.edu/~heimbach
>>>> > MIT | EAPS 54-1420 | 77 Massachusetts Ave | Cambridge MA 02139 USA
>>>> > FON +1-617-253-5259 | FAX +1-617-253-4464 | SKYPE patrick.heimbach
>>>> >
>>>>
>>>>
>>>
>>>
>>> --
>>> Dr Jonny Williams
>>> School of Geographical Sciences
>>> University of Bristol
>>> University Road
>>> BS8 1SS
>>>
>>> +44 (0)117 3318352
>>> jonny.williams at bristol.ac.uk
>>> bit.ly/jonnywilliams
>>>
>>
>>
>>
>> --
>> Dr Jonny Williams
>> School of Geographical Sciences
>> University of Bristol
>> University Road
>> BS8 1SS
>>
>> +44 (0)117 3318352
>> jonny.williams at bristol.ac.uk
>> bit.ly/jonnywilliams
>>
>> _______________________________________________
>> MITgcm-support mailing list
>> MITgcm-support at mitgcm.org
>> http://mitgcm.org/mailman/listinfo/mitgcm-support
>>
>>
>
>
> --
> Dr Fanny M Monteiro
> NERC Research Fellow
> School of Geographical Sciences
>
> University of Bristol, Bristol BS8 1SS, UK
> Phone (+44) 117 928 9068
> Email f.monteiro at bristol.ac.uk
> Web http://www.bris.ac.uk/geography/people/fanny-m-monteiro
>
> _______________________________________________
> MITgcm-support mailing list
> MITgcm-support at mitgcm.org
> http://mitgcm.org/mailman/listinfo/mitgcm-support
>
>

-- 
Dr Jonny Williams
School of Geographical Sciences
University of Bristol
University Road
BS8 1SS

+44 (0)117 3318352
jonny.williams at bristol.ac.uk
bit.ly/jonnywilliams
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