[MITgcm-support] MITgcm 40km resolution Arctic simulation

Thu Oct 24 12:09:25 EDT 2013

Hi Jonny,

Thanks for giving access to your notes. It will be very helpful for the
rest of the community.

Cheers
Fanny

On 24 October 2013 17:01, Jonny Williams <Jonny.Williams at bristol.ac.uk>wrote:

> Hi there
>
> I have put a detailed guide on how to get the Arctic regional model
> working here<http://www.paleo.bris.ac.uk/~ggjhtw/MITgcm_cs_36km_guide.pdf>.
> Many thanks again to many of you for your help, particularly Dimitris,
> Patrick and Renske.
>
> Jonny
>
>
> On 23 October 2013 18:30, Jonny Williams <Jonny.Williams at bristol.ac.uk>wrote:
>
>> Hi there
>>
>> Just to say that I now have this configuration working. I will post a
>> detailed how-to tomorrow.
>>
>> Many thanks
>>
>> Jonny
>>
>>
>> On 21 October 2013 17:45, Menemenlis, Dimitris (3248) <
>> Dimitris.Menemenlis at jpl.nasa.gov> wrote:
>>
>>> Hi Jonny, the *.bin files are available here:
>>> http://ecco2.jpl.nasa.gov/data1/arctic/run_template2/
>>> I thought that you had already downloaded them?
>>> As Patrick says, the CVS server only contains
>>> code files you need to compile and the input
>>> parameter files for running the code.  For the binary
>>> files that specify grid configuration, surface
>>> forcing, and boundary conditions, you can use the
>>> ones from http://ecco2.jpl.nasa.gov/data1/arctic/run_template2/
>>> and http://ecco2.jpl.nasa.gov/data2/data/atmos/
>>>
>>> I will try to check-in a readme file later today that makes this
>>> explicit.
>>>
>>> Cheers
>>>
>>> Dimitris Menemenlis
>>>
>>> On Oct 21, 2013, at 9:33 AM, Patrick Heimbach wrote:
>>>
>>> > Hi Jonny,
>>> >
>>> > the model is looking for input fields.
>>> > For "non-standard" experiments (i.e. that are not part of the
>>> verification suite) and which are large, those fields are not placed in the
>>> CVS repository (would be too large).
>>> >
>>> > We'll try to place the required input somewhere on the ECCO data
>>> server. Watch this space (I need to find a spare moment...)
>>> >
>>> > -Patrick
>>> >
>>> > On Oct 21, 2013, at 9:20 AM, Jonny Williams <
>>> Jonny.Williams at bristol.ac.uk> wrote:
>>> >
>>> >> and incidentally, I have done a "grep" on the whole cs_36km directory
>>> and there appears to be no mention of any file called "LONC.bin.data" so I
>>> am not sure why the code is looking for this?
>>> >>
>>> >> Thanks
>>> >>
>>> >> Jonny
>>> >>
>>> >>
>>> >> On 21 October 2013 11:25, Jonny Williams <
>>> Jonny.Williams at bristol.ac.uk> wrote:
>>> >> Thanks a lot for this
>>> >>
>>> >> I've downloaded and compiled the job successfully but at run time I
>>> get the following in the error file...
>>> >>
>>> >> Warning: ieee_inexact is signaling
>>> >> ABNORMAL END: S/R MDS_READ_FIELD
>>> >> [NID 02177] 2013-10-21 10:03:34 Apid 6025263: initiated application
>>> termination
>>> >>
>>> >> ... which I assumer is due to the following in the STDERR.0000 file...
>>> >>
>>> >> (PID.TID 0000.0001) ** Warning ** DIAGNOSTICS_READPARMS: ignores
>>> "data.diagnostics" file since
>>> >> (PID.TID 0000.0001) ** Warning ** DIAGNOSTICS_READPARMS:
>>> useDiagnostics= F (set from "data.pkg")
>>> >> (PID.TID 0000.0001) ** WARNING ** INI_MODEL_IO: use tiled-files to
>>> write sections (for OBCS)
>>> >> (PID.TID 0000.0001) *** ERROR ***  MDS_READ_FIELD: filename:
>>> LONC.bin.data
>>> >> (PID.TID 0000.0001) *** ERROR ***  MDS_READ_FIELD: File does not exist
>>> >>
>>> >> Indeed there is no LONC.bin.data file present in the input directory
>>> so I assume this is the problem?
>>> >>
>>> >> Thanks again
>>> >>
>>> >> Jonny
>>> >>
>>> >>
>>> >>
>>> >>
>>> >>
>>> >>
>>> >>
>>> >> On 18 October 2013 22:12, Menemenlis, Dimitris (3248) <
>>> Dimitris.Menemenlis at jpl.nasa.gov> wrote:
>>> >> Jonny, hi again.  I did not get around to testing but Patrick
>>> Heimbach kindly provided
>>> >> a 36-km configuration that ran successfully in February.  I checked
>>> it in under:
>>> http://mitgcm.org/viewvc/MITgcm/MITgcm_contrib/arctic/cs_36km/
>>> >>
>>> >> I will try to take a quick look at it this weekend - but if you give
>>> it a try first and it works,
>>> >> let me know - or if there is still an error message or something
>>> missing - reply to this
>>> >> message, including mitgcm-support and we will try to help you.
>>> >>
>>> >> Cheers
>>> >>
>>> >> Dimitris Menemenlis
>>> >>
>>> >>
>>> >>
>>> >>
>>> >> --
>>> >> Dr Jonny Williams
>>> >> School of Geographical Sciences
>>> >> University of Bristol
>>> >> University Road
>>> >> BS8 1SS
>>> >>
>>> >> +44 (0)117 3318352
>>> >> jonny.williams at bristol.ac.uk
>>> >> bit.ly/jonnywilliams
>>> >>
>>> >>
>>> >>
>>> >> --
>>> >> Dr Jonny Williams
>>> >> School of Geographical Sciences
>>> >> University of Bristol
>>> >> University Road
>>> >> BS8 1SS
>>> >>
>>> >> +44 (0)117 3318352
>>> >> jonny.williams at bristol.ac.uk
>>> >> bit.ly/jonnywilliams
>>> >> _______________________________________________
>>> >> MITgcm-support mailing list
>>> >> MITgcm-support at mitgcm.org
>>> >> http://mitgcm.org/mailman/listinfo/mitgcm-support
>>> >
>>> >
>>> > ---
>>> > Patrick Heimbach | heimbach at mit.edu | http://www.mit.edu/~heimbach
>>> > MIT | EAPS 54-1420 | 77 Massachusetts Ave | Cambridge MA 02139 USA
>>> > FON +1-617-253-5259 | FAX +1-617-253-4464 | SKYPE patrick.heimbach
>>> >
>>>
>>>
>>
>>
>> --
>> Dr Jonny Williams
>> School of Geographical Sciences
>> University of Bristol
>> University Road
>> BS8 1SS
>>
>> +44 (0)117 3318352
>> jonny.williams at bristol.ac.uk
>> bit.ly/jonnywilliams
>>
>
>
>
> --
> Dr Jonny Williams
> School of Geographical Sciences
> University of Bristol
> University Road
> BS8 1SS
>
> +44 (0)117 3318352
> jonny.williams at bristol.ac.uk
> bit.ly/jonnywilliams
>
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> MITgcm-support at mitgcm.org
> http://mitgcm.org/mailman/listinfo/mitgcm-support
>
>

-- 
Dr Fanny M Monteiro
NERC Research Fellow
School of Geographical Sciences
University of Bristol, Bristol BS8 1SS, UK
Phone (+44) 117 928 9068
Email f.monteiro at bristol.ac.uk
Web http://www.bris.ac.uk/geography/people/fanny-m-monteiro
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