[MITgcm-support] MITgcm 40km resolution Arctic simulation

Tue Oct 22 11:59:48 EDT 2013

Hi Jonny, I was just about to write instructions for running config.
Do you have any further messages at tail end of STDOUT.* or STDERR.* ?
Have you copied all the obcs files to your runtime directory?

Dimitris Menemenlis

On Oct 22, 2013, at 8:56 AM, Jonny Williams wrote:

Hi

Right I think we are making some progress... I am now using the input files from http://ecco2.jpl.nasa.gov/data1/arctic/run_template2/ as suggested THANKS!

The error I am now getting is...

(PID.TID 0000.0001) ** Warning ** DIAGNOSTICS_READPARMS: ignores "data.diagnostics" file since
(PID.TID 0000.0001) ** Warning ** DIAGNOSTICS_READPARMS: useDiagnostics= F (set from "data.pkg")
(PID.TID 0000.0001) ** WARNING ** INI_MODEL_IO: use tiled-files to write sections (for OBCS)
(PID.TID 0000.0001) ** WARNING ** SEAICE_CHECK: turbulent ice-ocn heat flux default changed.
(PID.TID 0000.0001) ** WARNING ** SEAICE_CHECK:    To recover the old default : set
(PID.TID 0000.0001) ** WARNING ** SEAICE_CHECK:    SEAICE_mcPheePiston to the first ocn level
(PID.TID 0000.0001) ** WARNING ** SEAICE_CHECK:    thickness divided by SEAICE_deltaTtherm.
(PID.TID 0000.0001) ** WARNING ** SEAICE_CHECK: variable freezing point is new default.
(PID.TID 0000.0001) ** WARNING ** SEAICE_CHECK:    To recover old constant freezing :
(PID.TID 0000.0001) ** WARNING ** SEAICE_CHECK:    set SEAICE_tempFrz0 = -1.96 and
(PID.TID 0000.0001) ** WARNING ** SEAICE_CHECK:    SEAICE_dTempFrz_dS = 0.
(PID.TID 0000.0001) *** ERROR ***  MDS_READ_SEC_XZ: Files DO not exist

The only error in this (as opposed to a warning!) is

(PID.TID 0000.0001) *** ERROR ***  MDS_READ_SEC_XZ: Files DO not exist

I does not seem to actually say which riles are missing however... Does this look familiar?

Many thanks

Jonny

On 21 October 2013 17:45, Menemenlis, Dimitris (3248) <Dimitris.Menemenlis at jpl.nasa.gov<mailto:Dimitris.Menemenlis at jpl.nasa.gov>> wrote:
Hi Jonny, the *.bin files are available here:
http://ecco2.jpl.nasa.gov/data1/arctic/run_template2/
I thought that you had already downloaded them?
As Patrick says, the CVS server only contains
code files you need to compile and the input
parameter files for running the code.  For the binary
files that specify grid configuration, surface
forcing, and boundary conditions, you can use the
ones from http://ecco2.jpl.nasa.gov/data1/arctic/run_template2/
and http://ecco2.jpl.nasa.gov/data2/data/atmos/

I will try to check-in a readme file later today that makes this explicit.

Cheers

Dimitris Menemenlis

On Oct 21, 2013, at 9:33 AM, Patrick Heimbach wrote:

> Hi Jonny,
>
> the model is looking for input fields.
> For "non-standard" experiments (i.e. that are not part of the verification suite) and which are large, those fields are not placed in the CVS repository (would be too large).
>
> We'll try to place the required input somewhere on the ECCO data server. Watch this space (I need to find a spare moment...)
>
> -Patrick
>
> On Oct 21, 2013, at 9:20 AM, Jonny Williams <Jonny.Williams at bristol.ac.uk<mailto:Jonny.Williams at bristol.ac.uk>> wrote:
>
>> and incidentally, I have done a "grep" on the whole cs_36km directory and there appears to be no mention of any file called "LONC.bin.data" so I am not sure why the code is looking for this?
>>
>> Thanks
>>
>> Jonny
>>
>>
>> On 21 October 2013 11:25, Jonny Williams <Jonny.Williams at bristol.ac.uk<mailto:Jonny.Williams at bristol.ac.uk>> wrote:
>> Thanks a lot for this
>>
>> I've downloaded and compiled the job successfully but at run time I get the following in the error file...
>>
>> Warning: ieee_inexact is signaling
>> ABNORMAL END: S/R MDS_READ_FIELD
>> [NID 02177] 2013-10-21 10:03:34 Apid 6025263: initiated application termination
>>
>> ... which I assumer is due to the following in the STDERR.0000 file...
>>
>> (PID.TID 0000.0001) ** Warning ** DIAGNOSTICS_READPARMS: ignores "data.diagnostics" file since
>> (PID.TID 0000.0001) ** Warning ** DIAGNOSTICS_READPARMS: useDiagnostics= F (set from "data.pkg")
>> (PID.TID 0000.0001) ** WARNING ** INI_MODEL_IO: use tiled-files to write sections (for OBCS)
>> (PID.TID 0000.0001) *** ERROR ***  MDS_READ_FIELD: filename: LONC.bin.data
>> (PID.TID 0000.0001) *** ERROR ***  MDS_READ_FIELD: File does not exist
>>
>> Indeed there is no LONC.bin.data file present in the input directory so I assume this is the problem?
>>
>> Thanks again
>>
>> Jonny
>>
>>
>>
>>
>>
>>
>>
>> On 18 October 2013 22:12, Menemenlis, Dimitris (3248) <Dimitris.Menemenlis at jpl.nasa.gov<mailto:Dimitris.Menemenlis at jpl.nasa.gov>> wrote:
>> Jonny, hi again.  I did not get around to testing but Patrick Heimbach kindly provided
>> a 36-km configuration that ran successfully in February.  I checked it in under: http://mitgcm.org/viewvc/MITgcm/MITgcm_contrib/arctic/cs_36km/
>>
>> I will try to take a quick look at it this weekend - but if you give it a try first and it works,
>> let me know - or if there is still an error message or something missing - reply to this
>> message, including mitgcm-support and we will try to help you.
>>
>> Cheers
>>
>> Dimitris Menemenlis
>>
>>
>>
>>
>> --
>> Dr Jonny Williams
>> School of Geographical Sciences
>> University of Bristol
>> University Road
>> BS8 1SS
>>
>> +44 (0)117 3318352<tel:%2B44%20%280%29117%203318352>
>> jonny.williams at bristol.ac.uk<mailto:jonny.williams at bristol.ac.uk>
>> bit.ly/jonnywilliams<http://bit.ly/jonnywilliams>
>>
>>
>>
>> --
>> Dr Jonny Williams
>> School of Geographical Sciences
>> University of Bristol
>> University Road
>> BS8 1SS
>>
>> +44 (0)117 3318352<tel:%2B44%20%280%29117%203318352>
>> jonny.williams at bristol.ac.uk<mailto:jonny.williams at bristol.ac.uk>
>> bit.ly/jonnywilliams<http://bit.ly/jonnywilliams>
>> _______________________________________________
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>
>
> ---
> Patrick Heimbach | heimbach at mit.edu<mailto:heimbach at mit.edu> | http://www.mit.edu/~heimbach
> MIT | EAPS 54-1420 | 77 Massachusetts Ave | Cambridge MA 02139 USA
> FON +1-617-253-5259<tel:%2B1-617-253-5259> | FAX +1-617-253-4464<tel:%2B1-617-253-4464> | SKYPE patrick.heimbach
>

--
Dr Jonny Williams
School of Geographical Sciences
University of Bristol
University Road
BS8 1SS

+44 (0)117 3318352
jonny.williams at bristol.ac.uk<mailto:jonny.williams at bristol.ac.uk>
bit.ly/jonnywilliams<http://bit.ly/jonnywilliams>

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