[MITgcm-support] problem running MITgcm/verification//tutorial_global_oce_latlon/

Thu Oct 10 05:33:58 EDT 2013

Thanks for your suggestions.

In the ~/MITgcm/verification/tutorial_global_oce_latlon/ example, I hadn't
copied the contents of the input directory to my run directory. Having now
done this I get many .meta and .data files in my run directory and the
contents of the testing1.e1727853 output file reads...

Warning: ieee_inexact is signaling
Warning: ieee_inexact is signaling
NORMAL END
NORMAL END

... which I assume means that the job has terminated normally? I can't see
any actual model output however.

Assuming I am correct (a big assumption!) would anyone be able to suggest a
different experiment for me to try running a model with some (ideally)
NetCDF output?

Many thanks again

Jonny

On 9 October 2013 21:32, Menemenlis, Dimitris (3248) <
Dimitris.Menemenlis at jpl.nasa.gov> wrote:

>  I agree with Jody's assessment.
> It looks like your build options file is missing a few links
> to libraries, include files, compilers, etc.
>
>  Dimitris Menemenlis
>
>  On Oct 9, 2013, at 7:47 AM, Jonny Williams wrote:
>
>  Thanks, I've attached the command line output from running this command
> as you suggested...
>
>  Jonny
>
>
> On 9 October 2013 15:38, Menemenlis, Dimitris (3248) <
> Dimitris.Menemenlis at jpl.nasa.gov> wrote:
>
>>  Looks like you are missing other parameter files too.
>>
>>  In verification try: ./testreport -mpi -t global_ovean.cs32x15
>>
>> Dimitris Menemenlis
>> 818-625-6498
>>
>> On Oct 9, 2013, at 7:32 AM, "Jonny Williams" <
>> Jonny.Williams at bristol.ac.uk> wrote:
>>
>>   I have now found a file which I think is along the lines of what I
>> need (eedata). Its contents is as follows...
>>
>>  START
>>
>>  # Example "eedata" file
>> # Lines beginning "#" are comments
>> # nTx - No. threads per process in X
>> # nTy - No. threads per process in Y
>>  &EEPARMS
>>  nTx=1,nTy=1
>>  /
>> # Note: Some systems use & as the
>> # namelist terminator. Other systems
>> # use a / character (as shown here).
>>
>>  END
>>
>>  I am now getting a different error, which is as follows...
>>
>>  START
>>
>>  Warning: ieee_inexact is signaling
>> Warning: ieee_inexact is signaling
>> ABNORMAL END: S/R OPEN_COPY_DATA_FILE
>> ABNORMAL END: S/R OPEN_COPY_DATA_FILE
>> [NID 02345] 2013-10-09 14:27:15 Apid 5947911: initiated application
>> termination
>>
>>  END
>>
>>  Thanks again
>>
>>  Jonny
>>
>>
>> On 9 October 2013 15:01, Menemenlis, Dimitris (3248) <
>> Dimitris.Menemenlis at jpl.nasa.gov> wrote:
>>
>>>  Do you have a file called "eedata" in your run directory?
>>>
>>> Dimitris Menemenlis
>>> 818-625-6498
>>>
>>> On Oct 9, 2013, at 6:57 AM, "Jonny Williams" <
>>> Jonny.Williams at bristol.ac.uk> wrote:
>>>
>>>   Hi there
>>>
>>>  I am trying to run
>>> the MITgcm/verification//tutorial_global_oce_latlon/ example which was
>>> pre-loaded when I downloaded the MITgcm code using CVS a couple of days
>>> ago.
>>>
>>>  I plan to run parallelised codes in the future and so I am using the
>>> SIZE.h file which was originally called SIZE.h_mpi in the default
>>> installation.
>>>
>>>  The code compiled successfully as far as I can tell.
>>>
>>>  When I attempt to run the script I get the following error message in
>>> a file called testing1.e1726317 (my job is called testing1)...
>>>
>>>  START
>>>
>>>  gPGFIO-F-209/formatted read/unit=13/'OLD' specified for file which
>>> does not exist.
>>>  In source file eeset_parms.f, at line number 1778
>>> [NID 02545] 2013-10-09 13:28:18 Apid 5947459: initiated application
>>> termination
>>>
>>>  END
>>>
>>>  The offending line (line 1778 of eeset_parms.f) reads as follows...
>>>
>>>  START
>>>
>>>  READ(eeDataUnit,FMT='(A)',END=1001) RECORD
>>>
>>>  END
>>>
>>>  Is anyone able to shed any light on this?
>>>
>>>  For your information I am running on the HECToR supercomputer cluster
>>> in the UK using scripts which were given to me by a collaborator who is
>>> already successfully using the MITgcm model on the same machine.
>>>
>>>  Many thanks!
>>>
>>>  Jonny Williams
>>>
>>>
>>>  --
>>>  Dr Jonny Williams
>>> School of Geographical Sciences
>>> University of Bristol
>>> University Road
>>> BS8 1SS
>>>
>>>  +44 (0)117 3318352
>>> jonny.williams at bristol.ac.uk<https://mail.google.com/mail/?view=cm&fs=1&tf=1&to=jonny.williams@bristol.ac.uk>
>>> bit.ly/jonnywilliams
>>>
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>>>
>>
>>
>>  --
>>  Dr Jonny Williams
>> School of Geographical Sciences
>> University of Bristol
>> University Road
>> BS8 1SS
>>
>>  +44 (0)117 3318352
>> jonny.williams at bristol.ac.uk
>> bit.ly/jonnywilliams
>>
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>> http://mitgcm.org/mailman/listinfo/mitgcm-support
>>
>>
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>>
>
>
>  --
>  Dr Jonny Williams
> School of Geographical Sciences
> University of Bristol
> University Road
> BS8 1SS
>
>  +44 (0)117 3318352
> jonny.williams at bristol.ac.uk
> bit.ly/jonnywilliams
>  <out.txt>_______________________________________________
>
> MITgcm-support mailing list
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>

-- 
Dr Jonny Williams
School of Geographical Sciences
University of Bristol
University Road
BS8 1SS

+44 (0)117 3318352
jonny.williams at bristol.ac.uk
bit.ly/jonnywilliams
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