[MITgcm-support] problem running MITgcm/verification//tutorial_global_oce_latlon/

Wed Oct 9 16:32:42 EDT 2013

I agree with Jody's assessment.
It looks like your build options file is missing a few links
to libraries, include files, compilers, etc.

Dimitris Menemenlis

On Oct 9, 2013, at 7:47 AM, Jonny Williams wrote:

Thanks, I've attached the command line output from running this command as you suggested...

Jonny

On 9 October 2013 15:38, Menemenlis, Dimitris (3248) <Dimitris.Menemenlis at jpl.nasa.gov<mailto:Dimitris.Menemenlis at jpl.nasa.gov>> wrote:
Looks like you are missing other parameter files too.

In verification try: ./testreport -mpi -t global_ovean.cs32x15

Dimitris Menemenlis
818-625-6498<tel:818-625-6498>

On Oct 9, 2013, at 7:32 AM, "Jonny Williams" <Jonny.Williams at bristol.ac.uk<mailto:Jonny.Williams at bristol.ac.uk>> wrote:

I have now found a file which I think is along the lines of what I need (eedata). Its contents is as follows...

START

# Example "eedata" file
# Lines beginning "#" are comments
# nTx - No. threads per process in X
# nTy - No. threads per process in Y
 &EEPARMS
 nTx=1,nTy=1
 /
# Note: Some systems use & as the
# namelist terminator. Other systems
# use a / character (as shown here).

END

I am now getting a different error, which is as follows...

START

Warning: ieee_inexact is signaling
Warning: ieee_inexact is signaling
ABNORMAL END: S/R OPEN_COPY_DATA_FILE
ABNORMAL END: S/R OPEN_COPY_DATA_FILE
[NID 02345] 2013-10-09 14:27:15 Apid 5947911: initiated application termination

END

Thanks again

Jonny

On 9 October 2013 15:01, Menemenlis, Dimitris (3248) <Dimitris.Menemenlis at jpl.nasa.gov<mailto:Dimitris.Menemenlis at jpl.nasa.gov>> wrote:
Do you have a file called "eedata" in your run directory?

Dimitris Menemenlis
818-625-6498<tel:818-625-6498>

On Oct 9, 2013, at 6:57 AM, "Jonny Williams" <Jonny.Williams at bristol.ac.uk<mailto:Jonny.Williams at bristol.ac.uk>> wrote:

Hi there

I am trying to run the MITgcm/verification//tutorial_global_oce_latlon/ example which was pre-loaded when I downloaded the MITgcm code using CVS a couple of days ago.

I plan to run parallelised codes in the future and so I am using the SIZE.h file which was originally called SIZE.h_mpi in the default installation.

The code compiled successfully as far as I can tell.

When I attempt to run the script I get the following error message in a file called testing1.e1726317 (my job is called testing1)...

START

gPGFIO-F-209/formatted read/unit=13/'OLD' specified for file which does not exist.
 In source file eeset_parms.f, at line number 1778
[NID 02545] 2013-10-09 13:28:18 Apid 5947459: initiated application termination

END

The offending line (line 1778 of eeset_parms.f) reads as follows...

START

READ(eeDataUnit,FMT='(A)',END=1001) RECORD

END

Is anyone able to shed any light on this?

For your information I am running on the HECToR supercomputer cluster in the UK using scripts which were given to me by a collaborator who is already successfully using the MITgcm model on the same machine.

Many thanks!

Jonny Williams

--
Dr Jonny Williams
School of Geographical Sciences
University of Bristol
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Dr Jonny Williams
School of Geographical Sciences
University of Bristol
University Road
BS8 1SS

+44 (0)117 3318352<tel:%2B44%20%280%29117%203318352>
jonny.williams at bristol.ac.uk<mailto:jonny.williams at bristol.ac.uk>
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Dr Jonny Williams
School of Geographical Sciences
University of Bristol
University Road
BS8 1SS

+44 (0)117 3318352
jonny.williams at bristol.ac.uk<mailto:jonny.williams at bristol.ac.uk>
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