[MITgcm-support] parallel running

[Martin Losch]

Hi Mahdi,

the first one is no problem (genmake2 tries a few things and based on the result includes a few extra routines or not, in this case, it's something about communication between model code and system in the case of crashing code).

The rest are (also benign) warnings about ifort option combinations, you should be able to understand those with the help of the ifort documentation, but I do not thinkg that you worry about them.

Martin

On Jul 19, 2011, at 7:46 AM, Mahdi Mohammadi wrote:

> Hi Martin,
> Thanks for your help. Now It is working, but I still receive the below Warnings, I have no idea whether it is a problem or not.
> 
> Can we register a signal handler using ifort...  no
> &
> ifort: command line warning #10121: overriding '-static-intel' with '-shared-intel'
> ifort: command line warning #10120: overriding '-O3' with '-O2'
> ifort: command line warning #10121: overriding '-xT' with '-xHost'
> 
> Regards,
> Mahdi
> 
> 
> Hi Mahdi,
> 
> after you have done a successful single cpu-run, I think you need to edit the opt file to adjust it to your system. I particular you need to the mitgcm where you mpi-header files are (e.g., mpi.h). Alternatively you can follow the instructions in linux_ia32_ifort11+mpi_generic and set MPI_INC_DIR (o: Also your mpi-installation needs to be able to use ifort (it seems to be configured for gfortran, right?). 
> 
> I suggest that you talk to your system-admin to figure these things out.
> 
> Martin
> 
> On Jul 17, 2011, at 1:26 AM, Mahdi Mohammadi wrote:
> 
> > Hi,
> > I have just started to use MITgcm. I did not manage to run parralel. I tried to run DOME test case, but I got an error that says, there is an undefained reference to gforton. It is strange, because my compiler is ifort11.1, and for optfile
> > I selected (ifort11-ia32&mpi&generic). I set root directory of netCDF and mpi in .bashrc, and did not edit optfile. How can I be sure what I have done is correct? Is there any sample for optfile? Do you have any idea about my problem?
> >  
> > Many thanks in advance and best Regards,
> > mahdi Mohammadi-Aragh
> > _______________________________________________
> >
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