[MITgcm-support] Problem building adjoint

[Santha Akella]

Patrick,

I hit another problem now.
After computing the cost, my code dies and it produces the following error
msg in the PBS output (for all the CPUs). I guess it has got some thing with
the adjoint and TAF. Everything seemed to work fine when I was using
-version 1.9.48 in AD_TAF_FLAGS. Now I have problems with that 1.9.48, and
TAF was not taking it. I checked with staf -show versions and got: 1.9.22,
1.9.63, 1.9.65, 1.9.66. I tried 1.9.22. And I am having these problems...
Thanks for the help! Santha


!!!!!!! PANIC !!!!!!! CATASTROPHIC ERROR
 !!!!!!! PANIC !!!!!!! in S/R BARRIER  myThid =            0  nThreads =
           1


On Mon, Jan 25, 2010 at 9:31 PM, Santha Akella <santha.akella at gmail.com>wrote:

> Hello Patrick,
> Thanks so much !
>
> It worked!
> Santha
>
>
> On Mon, Jan 25, 2010 at 9:22 PM, Patrick Heimbach <heimbach at mit.edu>wrote:
>
>>
>> Hi Santha,
>>
>> this error message indicates that at link time the compiler "sees"
>> that the executable it generates exceeds the available memory.
>>
>> This is consistent with the fact that Pleiades (unfortunately) only has
>> 512MB per
>> processor (I think) compared to, e.g. Columbia or the GFDL Altix (which
>> both had ~2GB).
>> So you'll need to lower your number for your inner-most checkpoint
>> which you've currently set to
>>      integer    nchklev_1
>>      parameter( nchklev_1      =    16 )
>>
>> Please give that a try.
>> -Patrick
>>
>>
>>
>>
>> On Jan 25, 2010, at 9:15 PM, Santha Akella wrote:
>>
>>  Dear MITgcm Users,
>>>
>>> I am trying to build my adjoint model on NASA-Pleiades , everything seems
>>> to go well, but in the end of building, I get the following error message.
>>> Please Help! I am attaching my Makefile, SIZE.h and tamc.h files. Thank you,
>>> Santha
>>> -------r_stats.o  ad_taf_output.o -L/nasa/sgi/mpt/1.23try08/lib64 -lmpi
>>> -L/nasa/netcdf/3.6.0/intel/lib -lnetcdf
>>> /nasa/intel/Compiler/11.0/083/lib/intel64/libifcore.a(for_aio.o): In
>>> function `for_waitid':
>>> for_aio.c:(.text+0x13a8): relocation truncated to fit: R_X86_64_32S
>>> against symbol `for__aio_lub_table' defined in COMMON section in
>>> /nasa/intel/Compiler/11.0/083/lib/intel64/libifcore.a(for_aio.o)
>>> /nasa/intel/Compiler/11.0/083/lib/intel64/libifcore.a(for_aio.o): In
>>> function `for_asynchronous':
>>> for_aio.c:(.text+0x2cd7): relocation truncated to fit: R_X86_64_32S
>>> against symbol `for__aio_lub_table' defined in COMMON section in
>>> /nasa/intel/Compiler/11.0/083/lib/intel64/libifcore.a(for_aio.o)
>>> /nasa/intel/Compiler/11.0/083/lib/intel64/libifcore.a(for_aio.o): In
>>> function `for__aio_release_lun':
>>> for_aio.c:(.text+0x3633): relocation truncated to fit: R_X86_64_32S
>>> against symbol `for__aio_lub_table' defined in COMMON section in
>>> /nasa/intel/Compiler/11.0/083/lib/intel64/libifcore.a(for_aio.o)
>>> for_aio.c:(.text+0x36f7): relocation truncated to fit: R_X86_64_32S
>>> against symbol `for__aio_lub_table' defined in COMMON section in
>>> /nasa/intel/Compiler/11.0/083/lib/intel64/libifcore.a(for_aio.o)
>>> for_aio.c:(.text+0x3712): relocation truncated to fit: R_X86_64_32S
>>> against symbol `for__aio_lub_table' defined in COMMON section in
>>> /nasa/intel/Compiler/11.0/083/lib/intel64/libifcore.a(for_aio.o)
>>> /nasa/intel/Compiler/11.0/083/lib/intel64/libifcore.a(for_aio.o): In
>>> function `for__aio_acquire_lun':
>>> for_aio.c:(.text+0x3c27): relocation truncated to fit: R_X86_64_32S
>>> against symbol `for__aio_lub_table' defined in COMMON section in
>>> /nasa/intel/Compiler/11.0/083/lib/intel64/libifcore.a(for_aio.o)
>>> for_aio.c:(.text+0x3c8f): relocation truncated to fit: R_X86_64_32S
>>> against symbol `for__aio_lub_table' defined in COMMON section in
>>> /nasa/intel/Compiler/11.0/083/lib/intel64/libifcore.a(for_aio.o)
>>> for_aio.c:(.text+0x3dd9): relocation truncated to fit: R_X86_64_32S
>>> against symbol `for__aio_lub_table' defined in COMMON section in
>>> /nasa/intel/Compiler/11.0/083/lib/intel64/libifcore.a(for_aio.o)
>>> for_aio.c:(.text+0x40c0): relocation truncated to fit: R_X86_64_32S
>>> against symbol `for__aio_lub_table' defined in COMMON section in
>>> /nasa/intel/Compiler/11.0/083/lib/intel64/libifcore.a(for_aio.o)
>>> /nasa/intel/Compiler/11.0/083/lib/intel64/libifcore.a(for_aio.o): In
>>> function `for__aio_acquire_lun_fname':
>>> for_aio.c:(.text+0x4369): relocation truncated to fit: R_X86_64_32S
>>> against symbol `for__aio_lub_table' defined in COMMON section in
>>> /nasa/intel/Compiler/11.0/083/lib/intel64/libifcore.a(for_aio.o)
>>> /nasa/intel/Compiler/11.0/083/lib/intel64/libifcore.a(for_aio.o): In
>>> function `for__aio_error_handling':
>>> for_aio.c:(.text+0x4b4b): additional relocation overflows omitted from
>>> the output
>>> make: *** [mitgcmuv_ad] Error 1
>>> -------------------------
>>>
>>
>> ---
>> Patrick Heimbach | heimbach at mit.edu | http://www.mit.edu/~heimbach<http://www.mit.edu/%7Eheimbach>
>> MIT | EAPS 54-1518 | 77 Massachusetts Ave | Cambridge MA 02139 USA
>> FON +1-617-253-5259 | FAX +1-617-253-4464 | SKYPE patrick.heimbach
>>
>>
>>
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>
>
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