[MITgcm-support] error in MITgcm compilation

[Patrick Heimbach]

Suneet,

I am out of office/town/country for 1.5 weeks, so can't help you.
Best advice is to start from a working verification, e.g.
lab_sea/
(see the code_ad/ directory) or
natl_box_adjoint/
(see README)
using a "clean checkpoint", e.g. checkpoint59m (which is latest),
and modify setup to re-configure to your application.

-Patrick



Quoting Suneet Dwivedi <suneetdwivedi at gmail.com>:

> Hi Patrick,
>
> Please find attached the CPP options files "CPP_OPTIONS.h and
> ECCO_CPPOPTIONS.h" alongwith "the_main_loop.F and the_main_loop.f"
> files for you perusal. I really don't know what is going wrong with
> compilation. Please help.
>
> Eagerly waiting for your reply,
>
> Regards,
>
> Suneet
>
> On Feb 5, 2008 5:49 PM, Patrick Heimbach <heimbach at mit.edu> wrote:
>>
>> OK.
>> Still a bit hard to see what's going wrong
>> without knowing your config. files (the CPP options),
>> but essentially from what you send before it seems that
>> the header file AUTODIFF.h which contains arrays
>> StoreDynVars3D, StoreDynVars2D, etc.
>> is not properly included in the_main_loop.F
>> and therefore TAF chokes on undeclared arrays.
>> You can verify this by examining the_main_loop.f ("small f").
>> You can then try to figure out why it's not included.
>> One suspicion/guess that I have is that you have
>> an old version of the_main_loop.F,
>> but a newer version of the rest of the code.
>>
>> Hope this helps a bit.
>> -p.
>>
>>
>>
>>
>> On Feb 5, 2008, at 5:00 PM, Suneet Dwivedi wrote:
>>
>> > Hi Patrick,
>> >
>> > Thankyou very much for your reply.  You are right that I am trying to
>> > build the adjoint and I intend to test some ocean state estimation
>> > experiments in southern ocean region. The region in which i am
>> > interested is 25W-55W and 45S-60S. I have access to TAF and enabled
>> > 4-level checkpoint. I wonder whether the error is related to some
>> > input data files in data.ecco because i am not able to understand
>> > meaning of some input files especially the  *__errfile and how these
>> > are generated.
>> >
>> > Kindly suggest me how to tackle these errors.
>> >
>> > Regards,
>> >
>> > Suneet
>> >
>> >
>> > On Feb 5, 2008 4:26 PM, Patrick Heimbach <heimbach at mit.edu> wrote:
>> >>
>> >> Hi there,
>> >>
>> >> a bit hard to tell how you managed to do that,
>> >> unless you have tried to build the adjoint (which you didn't mention)
>> >> and have access to TAF, and have enabled 4-level checkpointing
>> >> (which is disabled by default),
>> >> in which case you need to be more precise at what you're trying to do
>> >> (and all of this should be independent of compiling with or without
>> >> MPI).
>> >>
>> >> If you have not intended to build the adjoint, but just compile
>> >> the forward model, you may have gotten some CPP options wrong.
>> >> Also, you may have accidentally typed "make adall"
>> >> instead of "make all".
>> >>
>> >> -Patrick
>> >>
>> >>
>> >>
>> >>
>> >> On Feb 5, 2008, at 3:05 PM, Suneet Dwivedi wrote:
>> >>
>> >>> Hi Everyone,
>> >>>
>> >>> While building the MITgcm with MPI, i got the following error
>> >>> messages
>> >>> and then the build process stopped. Can anyone of you please suggest
>> >>> me how to get rid of these errors and where i am doing wrong in
>> >>> compilation.
>> >>>
>> >>> --------------------------------------------------------------------
>> >>> --
>> >>> -------------------------------------------------------------
>> >>> Processing files at fastopt.de, please wait.
>> >>>
>> >>> 1200121 CADJ STORE StoreDynVars3D     = tapelev4, key = ilev_4
>> >>>                   ^
>> >>> *ERROR* : identifier not defined
>> >>> 1200122 CADJ STORE StoreDynVars2D     = tapelev4, key = ilev_4
>> >>>                   ^
>> >>> *ERROR* : identifier not defined
>> >>> 1200143 CADJ STORE StoreEXF1        = tapelev4, key = ilev_4
>> >>>                   ^
>> >>> *ERROR* : identifier not defined
>> >>> 1200144 CADJ STORE StoreEXF2        = tapelev4, key = ilev_4
>> >>>                   ^
>> >>> *ERROR* : identifier not defined
>> >>> 1200145 CADJ STORE StoreCTRLS1      = tapelev4, key = ilev_4
>> >>>                   ^
>> >>> *ERROR* : identifier not defined
>> >>>
>> >>>  found 5 syntax error(s) in file ad_input_code.f
>> >>> found      5 errors
>> >>> no further analysis
>> >>> --------------------------------------------------------------------
>> >>> --
>> >>> ----------------------------------------------------
>> >>>
>> >>> Eagerly waiting for your reply,
>> >>>
>> >>> Suneet Dwivedi
>> >>> _______________________________________________
>> >>> MITgcm-support mailing list
>> >>> MITgcm-support at mitgcm.org
>> >>> http://mitgcm.org/mailman/listinfo/mitgcm-support
>> >>
>> >> ---
>> >> Patrick Heimbach | heimbach at mit.edu | http://www.mit.edu/~heimbach
>> >> MIT | EAPS 54-1518 | 77 Massachusetts Ave | Cambridge MA 02139 USA
>> >> FON +1-617-253-5259 | FAX +1-617-253-4464 | SKYPE patrick.heimbach
>> >>
>> >>
>> >> _______________________________________________
>> >> MITgcm-support mailing list
>> >> MITgcm-support at mitgcm.org
>> >> http://mitgcm.org/mailman/listinfo/mitgcm-support
>> >>
>> > _______________________________________________
>> > MITgcm-support mailing list
>> > MITgcm-support at mitgcm.org
>> > http://mitgcm.org/mailman/listinfo/mitgcm-support
>>
>> ---
>> Patrick Heimbach | heimbach at mit.edu | http://www.mit.edu/~heimbach
>> MIT | EAPS 54-1518 | 77 Massachusetts Ave | Cambridge MA 02139 USA
>> FON +1-617-253-5259 | FAX +1-617-253-4464 | SKYPE patrick.heimbach
>>
>>
>> _______________________________________________
>> MITgcm-support mailing list
>> MITgcm-support at mitgcm.org
>> http://mitgcm.org/mailman/listinfo/mitgcm-support
>>
>



--------------------------------------------------------
Patrick Heimbach   Massachusetts Institute of Technology
FON: +1/617/253-5259                  EAPS, Room 54-1518
FAX: +1/617/253-4464             77 Massachusetts Avenue
mailto:heimbach at mit.edu               Cambridge MA 02139
http://www.mit.edu/~heimbach/                        USA