[MITgcm-support] Suggestions for making MITgcm accessible
Samar Khatiwala
spk at ldeo.columbia.edu
Thu Jun 7 10:21:48 EDT 2007
Hi Jens-Olaf
This is a bit off topic, but just to follow up on your post:
I am currently running the MITgcm on an SX-8 at uni-kiel. This is a
coarse resolution configuration (128 x 64 x 15).
Unfortunately, performance has not be so great and, I am told by
other users of the SX, is significantly below its
theoretical peak. Even less than the 25-35% number you quote.
Perhaps you can advise, off-list, on how I can improve things.
Thanks
Samar
On Jun 7, 2007, at 2:28 PM, Jens-Olaf Beismann wrote:
> Dear MITgcm users,
>
>> This "philosphy" works fairly well for most single cpu and
>> parallel computer architectures, although I am now struggling with
>> a vector computer for which the MITgcm is only efficient if the
>> horizontal domain size is fairly large (because the code generally
>> excludes vectorization in the vertical dimension, and that's not
>> likely to change).
>
> just a quick comment regarding the use of the MITgcm on vector
> machines: I'm not familiar with Martin's application, but I know
> several MITgcm configurations which are used very efficiently on SX
> machines at other computing centres. These are "medium-sized"
> regional ocean models, and they typically run at appr. 25-35% of
> the theoretical peak performance.
>
> As Martin pointed out, it is necessary to have a completely
> vectorised code to achieve good vector performance, but there is no
> general problem in running the MITgcm on a vector machine.
>
> Best regards,
>
> Jens-Olaf
> --
> Dr. Jens-Olaf Beismann Benchmarking Analyst
> NEC High Performance Computing Europe GmbH
> Prinzenallee 11, D-40549 Duesseldorf, Germany
> Tel: +49 4326 288859 (office) +49 160 183 5289 (mobile)
> Fax: +49 4326 288861 http://www.hpce.nec.com
>
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