[MITgcm-support] problem with compilation

jeff polton jpolton at ucsd.edu
Tue Nov 15 17:10:15 EST 2005


Constantinos,

> Since you've built an MPI executable you should use poe to launch it.

That was indeed my hope but running it from the command line with poe 
or as a batch file is met with similar frustration. Actually the poe 
route gives a different error message which may help the diagnosis:

%poe ./mitgcmuv > output.txt -nodes 1 -tasks_per_node 16 -retry 30 
-retrycount 10

--------------------------------------------------------------
  User: jeff                       Repo: m556
  Job Name: <none specified>       Group: m556
  Class Of Service: interactive    Job Class: interactive
  Job Accepted: Mon Nov 14 15:35:42 2005
--------------------------------------------------------------

llsubmit: Processed command file through Submit Filter: 
"/usr/common/nsg/sbin/subfilter".
sh: ./mitgcmuv: 0403-006 Execute permission denied.
ERROR: 0031-250  task 11: Terminated
ERROR: 0031-250  task 0: Terminated
ERROR: 0031-250  task 4: Terminated
ERROR: 0031-250  task 7: Terminated
ERROR: 0031-250  task 9: Terminated
ERROR: 0031-250  task 14: Terminated
ERROR: 0031-250  task 2: Terminated
ERROR: 0031-250  task 3: Terminated
ERROR: 0031-250  task 5: Terminated
ERROR: 0031-250  task 6: Terminated
ERROR: 0031-250  task 8: Terminated
ERROR: 0031-250  task 10: Terminated
ERROR: 0031-250  task 12: Terminated
ERROR: 0031-250  task 13: Terminated
ERROR: 0031-250  task 15: Terminated


But the executable is executable by all:
%ls -lrt mit*
-rwx------    1 jeff     m556      5195296 2005-11-14 15:28 mitgcmuv

Hmmm. Anyone seen anything similar before?

Thanks,
Jeff

On Nov 15, 2005, at 12:23 PM, Constantinos Evangelinos wrote:

> On Tuesday 15 November 2005 13:57, jeff polton wrote:
>
>> Hi,
>> Using the newest genmake2 and DEFINES='-DWORDLENGTH=4' does let me get
>> further down the road to a running version of the MITgcm on an IBM SP.
>> In fact I now have an executable file but it crashes rather quickly:
>>
>> ./mitgcmuv: Syntax error at line 1: `)' not expected.
>
> Since you've built an MPI executable you should use poe to launch it.
>
> Constantinos
> -- 
> Dr. Constantinos Evangelinos
> Department of Earth, Atmospheric and Planetary Sciences
> Massachusetts Institute of Technology
>
> _______________________________________________
> MITgcm-support mailing list
> MITgcm-support at mitgcm.org
> http://mitgcm.org/mailman/listinfo/mitgcm-support
>




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