[MITgcm-support] problem with compilation
jeff polton
jpolton at ucsd.edu
Tue Nov 15 17:10:15 EST 2005
Constantinos,
> Since you've built an MPI executable you should use poe to launch it.
That was indeed my hope but running it from the command line with poe
or as a batch file is met with similar frustration. Actually the poe
route gives a different error message which may help the diagnosis:
%poe ./mitgcmuv > output.txt -nodes 1 -tasks_per_node 16 -retry 30
-retrycount 10
--------------------------------------------------------------
User: jeff Repo: m556
Job Name: <none specified> Group: m556
Class Of Service: interactive Job Class: interactive
Job Accepted: Mon Nov 14 15:35:42 2005
--------------------------------------------------------------
llsubmit: Processed command file through Submit Filter:
"/usr/common/nsg/sbin/subfilter".
sh: ./mitgcmuv: 0403-006 Execute permission denied.
ERROR: 0031-250 task 11: Terminated
ERROR: 0031-250 task 0: Terminated
ERROR: 0031-250 task 4: Terminated
ERROR: 0031-250 task 7: Terminated
ERROR: 0031-250 task 9: Terminated
ERROR: 0031-250 task 14: Terminated
ERROR: 0031-250 task 2: Terminated
ERROR: 0031-250 task 3: Terminated
ERROR: 0031-250 task 5: Terminated
ERROR: 0031-250 task 6: Terminated
ERROR: 0031-250 task 8: Terminated
ERROR: 0031-250 task 10: Terminated
ERROR: 0031-250 task 12: Terminated
ERROR: 0031-250 task 13: Terminated
ERROR: 0031-250 task 15: Terminated
But the executable is executable by all:
%ls -lrt mit*
-rwx------ 1 jeff m556 5195296 2005-11-14 15:28 mitgcmuv
Hmmm. Anyone seen anything similar before?
Thanks,
Jeff
On Nov 15, 2005, at 12:23 PM, Constantinos Evangelinos wrote:
> On Tuesday 15 November 2005 13:57, jeff polton wrote:
>
>> Hi,
>> Using the newest genmake2 and DEFINES='-DWORDLENGTH=4' does let me get
>> further down the road to a running version of the MITgcm on an IBM SP.
>> In fact I now have an executable file but it crashes rather quickly:
>>
>> ./mitgcmuv: Syntax error at line 1: `)' not expected.
>
> Since you've built an MPI executable you should use poe to launch it.
>
> Constantinos
> --
> Dr. Constantinos Evangelinos
> Department of Earth, Atmospheric and Planetary Sciences
> Massachusetts Institute of Technology
>
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> MITgcm-support at mitgcm.org
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