<html><head><meta http-equiv="Content-Type" content="text/html charset=utf-8"></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space;" class="">Hi Martin,<div class=""><br class=""></div><div class=""><br class=""></div><div class="">Thank you for getting back to me.</div><div class="">I do have the eedata file in the directory and what I have in the file is:</div><div class=""><br class=""></div><div class=""><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: Monaco; color: rgb(40, 254, 20); background-color: rgba(0, 0, 0, 0.901961);" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""> &EEPARMS</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: Monaco; color: rgb(40, 254, 20); background-color: rgba(0, 0, 0, 0.901961);" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""> debugMode=.TRUE.,</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: Monaco; color: rgb(40, 254, 20); background-color: rgba(0, 0, 0, 0.901961);" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""> &</span></div></div><div class=""><br class=""></div><div class="">I also checked lines around line 2141 in eeset_parms.f but I cannot seem to determine where the failure originates from:</div><div class=""><br class=""></div><div class=""><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: Monaco; color: rgb(82, 48, 225); background-color: rgba(0, 0, 0, 0.901961);" class=""><span style="font-variant-ligatures: no-common-ligatures" class="">C-- Read namelist</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: Monaco; color: rgb(40, 254, 20); background-color: rgba(0, 0, 0, 0.901961);" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""> iUnit </span><span style="font-variant-ligatures: no-common-ligatures; color: #cd7923" class="">=</span><span style="font-variant-ligatures: no-common-ligatures" class=""> scrUnit1</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: Monaco; color: rgb(40, 254, 20); background-color: rgba(0, 0, 0, 0.901961);" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""> </span><span style="font-variant-ligatures: no-common-ligatures; color: #cd7923" class="">REWIND</span><span style="font-variant-ligatures: no-common-ligatures" class="">(iUnit)</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: Monaco; color: rgb(40, 254, 20); background-color: rgba(0, 0, 0, 0.901961);" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""> </span><span style="font-variant-ligatures: no-common-ligatures; color: #cd7923" class="">READ</span><span style="font-variant-ligatures: no-common-ligatures" class="">(</span><span style="font-variant-ligatures: no-common-ligatures; color: #cd7923" class="">UNIT=</span><span style="font-variant-ligatures: no-common-ligatures" class="">iUnit,</span><span style="font-variant-ligatures: no-common-ligatures; color: #cd7923" class="">NML=</span><span style="font-variant-ligatures: no-common-ligatures" class="">EEPARMS,</span><span style="font-variant-ligatures: no-common-ligatures; color: #cd7923" class="">IOSTAT=</span><span style="font-variant-ligatures: no-common-ligatures" class="">errIO,</span><span style="font-variant-ligatures: no-common-ligatures; color: #cd7923" class="">err=3</span><span style="font-variant-ligatures: no-common-ligatures" class="">)</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: Monaco; color: rgb(40, 254, 20); background-color: rgba(0, 0, 0, 0.901961);" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""> </span><span style="font-variant-ligatures: no-common-ligatures; color: #cd7923" class="">IF</span><span style="font-variant-ligatures: no-common-ligatures" class=""> ( errIO </span><span style="font-variant-ligatures: no-common-ligatures; color: #cd7923" class="">.GE.</span><span style="font-variant-ligatures: no-common-ligatures" class=""> </span><span style="font-variant-ligatures: no-common-ligatures; color: #c33720" class="">0</span><span style="font-variant-ligatures: no-common-ligatures" class=""> ) </span><span style="font-variant-ligatures: no-common-ligatures; color: #cd7923" class="">GOTO</span><span style="font-variant-ligatures: no-common-ligatures" class=""> </span><span style="font-variant-ligatures: no-common-ligatures; color: #c33720" class="">4</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: Monaco; color: rgb(205, 121, 35); background-color: rgba(0, 0, 0, 0.901961);" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""> 3 CONTINUE</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: Monaco; color: rgb(40, 254, 20); background-color: rgba(0, 0, 0, 0.901961);" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""> </span><span style="font-variant-ligatures: no-common-ligatures; color: #cd7923" class="">IF</span><span style="font-variant-ligatures: no-common-ligatures" class=""> ( doReport ) </span><span style="font-variant-ligatures: no-common-ligatures; color: #cd7923" class="">THEN</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: Monaco; color: rgb(195, 55, 32); background-color: rgba(0, 0, 0, 0.901961);" class=""><span style="font-variant-ligatures: no-common-ligatures; color: #28fe14" class=""> </span><span style="font-variant-ligatures: no-common-ligatures; color: #cd7923" class="">WRITE</span><span style="font-variant-ligatures: no-common-ligatures; color: #28fe14" class="">(msgBuf,</span><span style="font-variant-ligatures: no-common-ligatures" class="">'(2A)'</span><span style="font-variant-ligatures: no-common-ligatures; color: #28fe14" class="">) </span><span style="font-variant-ligatures: no-common-ligatures" class="">'EESET_PARMS: '</span><span style="font-variant-ligatures: no-common-ligatures; color: #28fe14" class="">,</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: Monaco; color: rgb(195, 55, 32); background-color: rgba(0, 0, 0, 0.901961);" class=""><span style="font-variant-ligatures: no-common-ligatures; color: #28fe14" class=""> </span><span style="font-variant-ligatures: no-common-ligatures; color: #d53bd3" class="">&</span><span style="font-variant-ligatures: no-common-ligatures; color: #28fe14" class=""> </span><span style="font-variant-ligatures: no-common-ligatures" class="">'Error reading parameter file "eedata"'</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: Monaco; color: rgb(40, 254, 20); background-color: rgba(0, 0, 0, 0.901961);" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""> </span><span style="font-variant-ligatures: no-common-ligatures; color: #34bbc8" class="">CALL</span><span style="font-variant-ligatures: no-common-ligatures" class=""> PRINT_ERROR( msgBuf, </span><span style="font-variant-ligatures: no-common-ligatures; color: #c33720" class="">1</span><span style="font-variant-ligatures: no-common-ligatures" class=""> )</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: Monaco; color: rgb(40, 254, 20); background-color: rgba(0, 0, 0, 0.901961);" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""> </span><span style="font-variant-ligatures: no-common-ligatures; color: #34bbc8" class="">CALL</span><span style="font-variant-ligatures: no-common-ligatures" class=""> EEDATA_EXAMPLE</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: Monaco; color: rgb(40, 254, 20); background-color: rgba(0, 0, 0, 0.901961);" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""> eeBootError </span><span style="font-variant-ligatures: no-common-ligatures; color: #cd7923" class="">=</span><span style="font-variant-ligatures: no-common-ligatures" class=""> </span><span style="font-variant-ligatures: no-common-ligatures; color: #c33720" class="">.TRUE.</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: Monaco; color: rgb(40, 254, 20); background-color: rgba(0, 0, 0, 0.901961);" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""> </span><span style="font-variant-ligatures: no-common-ligatures; color: #cd7923" class="">ENDIF</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: Monaco; color: rgb(205, 121, 35); background-color: rgba(0, 0, 0, 0.901961);" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""> 4 CONTINUE</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: Monaco; color: rgb(40, 254, 20); background-color: rgba(0, 0, 0, 0.901961); min-height: 19px;" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""></span><br class=""></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: Monaco; color: rgb(82, 48, 225); background-color: rgba(0, 0, 0, 0.901961);" class=""><span style="font-variant-ligatures: no-common-ligatures" class="">C-- Execution Environment parameter file read</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: Monaco; color: rgb(40, 254, 20); background-color: rgba(0, 0, 0, 0.901961);" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""> </span><span style="font-variant-ligatures: no-common-ligatures; color: #cd7923" class="">CLOSE</span><span style="font-variant-ligatures: no-common-ligatures" class="">(iUnit,</span><span style="font-variant-ligatures: no-common-ligatures; color: #cd7923" class="">STATUS=</span><span style="font-variant-ligatures: no-common-ligatures; color: #c33720" class="">'DELETE'</span><span style="font-variant-ligatures: no-common-ligatures" class="">)</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: Monaco; color: rgb(40, 254, 20); background-color: rgba(0, 0, 0, 0.901961); min-height: 19px;" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""></span><br class=""></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: Monaco; color: rgb(40, 254, 20); background-color: rgba(0, 0, 0, 0.901961);" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""> </span><span style="font-variant-ligatures: no-common-ligatures; color: #cd7923" class="">IF</span><span style="font-variant-ligatures: no-common-ligatures" class=""> ( doReport </span><span style="font-variant-ligatures: no-common-ligatures; color: #cd7923" class="">.AND.</span><span style="font-variant-ligatures: no-common-ligatures" class=""> </span><span style="font-variant-ligatures: no-common-ligatures; color: #cd7923" class="">.NOT.</span><span style="font-variant-ligatures: no-common-ligatures" class="">usingMPI ) </span><span style="font-variant-ligatures: no-common-ligatures; color: #cd7923" class="">THEN</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: Monaco; color: rgb(195, 55, 32); background-color: rgba(0, 0, 0, 0.901961);" class=""><span style="font-variant-ligatures: no-common-ligatures; color: #28fe14" class=""> </span><span style="font-variant-ligatures: no-common-ligatures; color: #cd7923" class="">WRITE</span><span style="font-variant-ligatures: no-common-ligatures; color: #28fe14" class="">(msgBuf,</span><span style="font-variant-ligatures: no-common-ligatures" class="">'(2A)'</span><span style="font-variant-ligatures: no-common-ligatures; color: #28fe14" class="">) </span><span style="font-variant-ligatures: no-common-ligatures" class="">'EESET_PARMS: '</span><span style="font-variant-ligatures: no-common-ligatures; color: #28fe14" class="">,</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: Monaco; color: rgb(195, 55, 32); background-color: rgba(0, 0, 0, 0.901961);" class=""><span style="font-variant-ligatures: no-common-ligatures; color: #28fe14" class=""> </span><span style="font-variant-ligatures: no-common-ligatures; color: #d53bd3" class="">&</span><span style="font-variant-ligatures: no-common-ligatures; color: #28fe14" class=""> </span><span style="font-variant-ligatures: no-common-ligatures" class="">'in eedata: usingMPI=F conflicts'</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: Monaco; color: rgb(40, 254, 20); background-color: rgba(0, 0, 0, 0.901961);" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""> </span><span style="font-variant-ligatures: no-common-ligatures; color: #34bbc8" class="">CALL</span><span style="font-variant-ligatures: no-common-ligatures" class=""> PRINT_ERROR( msgBuf, </span><span style="font-variant-ligatures: no-common-ligatures; color: #c33720" class="">1</span><span style="font-variant-ligatures: no-common-ligatures" class=""> )</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: Monaco; color: rgb(195, 55, 32); background-color: rgba(0, 0, 0, 0.901961);" class=""><span style="font-variant-ligatures: no-common-ligatures; color: #28fe14" class=""> </span><span style="font-variant-ligatures: no-common-ligatures; color: #cd7923" class="">WRITE</span><span style="font-variant-ligatures: no-common-ligatures; color: #28fe14" class="">(msgBuf,</span><span style="font-variant-ligatures: no-common-ligatures" class="">'(A)'</span><span style="font-variant-ligatures: no-common-ligatures; color: #28fe14" class="">) </span><span style="font-variant-ligatures: no-common-ligatures" class="">'EESET_PARMS: with #define ALWAYS_USE_MPI'</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: Monaco; color: rgb(40, 254, 20); background-color: rgba(0, 0, 0, 0.901961);" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""> </span><span style="font-variant-ligatures: no-common-ligatures; color: #34bbc8" class="">CALL</span><span style="font-variant-ligatures: no-common-ligatures" class=""> PRINT_ERROR( msgBuf, </span><span style="font-variant-ligatures: no-common-ligatures; color: #c33720" class="">1</span><span style="font-variant-ligatures: no-common-ligatures" class=""> )</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: Monaco; color: rgb(40, 254, 20); background-color: rgba(0, 0, 0, 0.901961);" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""> eeBootError </span><span style="font-variant-ligatures: no-common-ligatures; color: #cd7923" class="">=</span><span style="font-variant-ligatures: no-common-ligatures" class=""> </span><span style="font-variant-ligatures: no-common-ligatures; color: #c33720" class="">.TRUE.</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: Monaco; color: rgb(40, 254, 20); background-color: rgba(0, 0, 0, 0.901961);" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""> </span><span style="font-variant-ligatures: no-common-ligatures; color: #cd7923" class="">ENDIF</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: Monaco; color: rgb(40, 254, 20); background-color: rgba(0, 0, 0, 0.901961);" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""> usingMPI </span><span style="font-variant-ligatures: no-common-ligatures; color: #cd7923" class="">=</span><span style="font-variant-ligatures: no-common-ligatures" class=""> </span><span style="font-variant-ligatures: no-common-ligatures; color: #c33720" class="">.TRUE.</span></div></div><div class=""><br class=""></div><div class="">What is weird to me is that the run works fine when the diagnostics package is turned off, but fails when it is turned on with no errors related to the package...</div><div class=""><br class=""><div class=""><br class="webkit-block-placeholder"></div><div class="">Best,</div><div class="">Takaya</div><div class="">
<div style="color: rgb(0, 0, 0); letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space;" class=""><div style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space;" class=""><div style="color: rgb(0, 0, 0); font-family: Helvetica; font-size: 12px; font-style: normal; font-variant-caps: normal; font-weight: normal; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px;">———————</div><div style="color: rgb(0, 0, 0); font-family: Helvetica; font-size: 12px; font-style: normal; font-variant-caps: normal; font-weight: normal; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px;">PhD Candidate</div><div style="color: rgb(0, 0, 0); font-family: Helvetica; font-size: 12px; font-style: normal; font-variant-caps: normal; font-weight: normal; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px;" class="">Physical Oceanography</div><div style="color: rgb(0, 0, 0); font-family: Helvetica; font-size: 12px; font-style: normal; font-variant-caps: normal; font-weight: normal; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px;" class="">Columbia University in the City of New York</div><div style="color: rgb(0, 0, 0); font-family: Helvetica; font-size: 12px; font-style: normal; font-variant-caps: normal; font-weight: normal; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px;" class=""><a href="https://roxyboy.github.io/" class="">https://roxyboy.github.io/</a></div></div></div>
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<br class=""><div><blockquote type="cite" class=""><div class="">On Nov 19, 2018, at 5:28 AM, Martin Losch <<a href="mailto:Martin.Losch@awi.de" class="">Martin.Losch@awi.de</a>> wrote:</div><br class="Apple-interchange-newline"><div class=""><div class="">Hi Takaya,<br class=""><br class="">the job-log implies says that the executable is looking for a file and cannot find it. And the traceback even gives a good clue, which file it is:<br class="">eeset_parms.F reads the file “eedata”. Are you sure that it is in your run directory?<br class=""><br class="">Martin<br class=""><br class=""><blockquote type="cite" class="">On 15. Nov 2018, at 23:48, Uchida Takaya <<a href="mailto:tu2140@columbia.edu" class="">tu2140@columbia.edu</a>> wrote:<br class=""><br class="">Dear MITgcm support,<br class=""><br class="">I have a run on Cheyenne, which runs fine without the diagnostics package turned on but fails within seconds once I turn the package on and it gives me no useful errors except for:<br class=""><br class="">MPT ERROR: MPI_COMM_WORLD rank 1589 has terminated without calling MPI_Finalize()<br class=""><span class="Apple-tab-span" style="white-space:pre"> </span>aborting job<br class=""><br class="">I use the same namelist files, which run fine on the Columbia University Habanero cluster so my expectation was that it should all work fine. I am a bit lost here and would like to know if others have had related issues running MITgcm on Cheyenne.<br class=""><br class="">The optfile I use, which can also be found here ( <a href="https://github.com/roxyboy/ChannelMOC_Cheyenne/tree/master/SO_only-physics/channel_flat" class="">https://github.com/roxyboy/ChannelMOC_Cheyenne/tree/master/SO_only-physics/channel_flat</a> ) including the namelist files, is:<br class=""><br class="">module load intel/17.0.1 mpt/2.15f netcdf/4.6.1<br class=""><br class="">FC=mpif90<br class="">CC=mpicc<br class="">F90C=mpif90<br class=""><br class="">DEFINES='-DALLOW_USE_MPI -DALWAYS_USE_MPI -DWORDLENGTH=4'<br class="">CPP='/lib/cpp -traditional -P'<br class="">EXTENDED_SRC_FLAG='-132'<br class="">OMPFLAG='-openmp'<br class="">CFLAGS='-fPIC'<br class="">LDADD='-shared-intel'<br class=""><br class="">LIBS="-L${MPI_ROOT}/lib"<br class="">INCLUDES="-I${MPI_ROOT}/include"<br class="">NOOPTFLAGS='-O0 -fPIC'<br class=""><br class="">#FFLAGS="-fPIC -convert big_endian -assume byterecl -align -xCORE-AVX2" # 4% slower with -O2<br class="">FFLAGS="-fPIC -convert big_endian -assume byterecl -align"<br class="">FDEBUG='-W0 -WB'<br class="">FFLAGS="$FDEBUG $FFLAGS"<br class=""><br class="">FOPTIM='-O3'<br class="">FOPTIM="$FOPTIM -ip -fp-model precise -traceback -ftz"<br class=""><br class="">Any advice would be appreciated.<br class=""><br class="">Thank you,<br class="">Takaya<br class="">———————<br class="">PhD Candidate<br class="">Physical Oceanography<br class="">Columbia University in the City of New York<br class=""><a href="https://roxyboy.github.io/" class="">https://roxyboy.github.io/</a><br class=""><br class="">_______________________________________________<br class="">MITgcm-support mailing list<br class="">MITgcm-support@mitgcm.org<br class="">http://mailman.mitgcm.org/mailman/listinfo/mitgcm-support<br class=""></blockquote><br class="">_______________________________________________<br class="">MITgcm-support mailing list<br class=""><a href="mailto:MITgcm-support@mitgcm.org" class="">MITgcm-support@mitgcm.org</a><br class="">http://mailman.mitgcm.org/mailman/listinfo/mitgcm-support<br class=""></div></div></blockquote></div><br class=""></div></body></html>