<div dir="ltr"><div dir="ltr"><div dir="ltr"><div dir="ltr"><div dir="ltr"><div dir="ltr"><div dir="ltr"><div dir="ltr"><div dir="ltr"><div dir="ltr"><div dir="ltr"><div dir="ltr">Dear MITgcm-support experts,</div><div dir="ltr"><br></div><div> I conduct idealized simulations on the curvilinear coordinates and do not need any tile. At first, I did not include
<span style="font-size:small;background-color:rgb(255,255,255);text-decoration-style:initial;text-decoration-color:initial;float:none;display:inline">mdsio in</span><span style="font-size:small;background-color:rgb(255,255,255);text-decoration-style:initial;text-decoration-color:initial;float:none;display:inline"><span> </span></span><span style="font-size:small;text-decoration-style:initial;text-decoration-color:initial;float:none;display:inline">packages.conf</span> and did not add "
<span style="font-size:small;background-color:rgb(255,255,255);text-decoration-style:initial;text-decoration-color:initial;float:none;display:inline">useMDSIO=.TRUE.," in <span style="text-decoration-style:initial;text-decoration-color:initial;float:none;display:inline">data.pkg. Although I got "NORMAL END" in the log file without any error message, the output files were only PHref?.???? and pickup.* files but without U, V, W, T, S, and Eta files as in the manual. After I added <span style="font-size:small;background-color:rgb(255,255,255);text-decoration-style:initial;text-decoration-color:initial;float:none;display:inline">"<span> </span></span><span style="font-size:small;text-decoration-style:initial;text-decoration-color:initial;background-color:rgb(255,255,255);float:none;display:inline">useMDSIO=.TRUE.," in <span style="text-decoration-style:initial;text-decoration-color:initial;float:none;display:inline">data.pkg, I got the error message "
<span style="font-size:small;background-color:rgb(255,255,255);text-decoration-style:initial;text-decoration-color:initial;float:none;display:inline">invalid reference to variable in NAMELIST input"
<span style="text-decoration-style:initial;text-decoration-color:initial;float:none;display:inline">input, unit 11, file
<span style="font-size:small;background-color:rgb(255,255,255);text-decoration-style:initial;text-decoration-color:initial;float:none;display:inline">scratch1.000000009, line 3, position 9".</span> I got the <span style="font-size:small;background-color:rgb(255,255,255);text-decoration-style:initial;text-decoration-color:initial;float:none;display:inline">U, V, W, T, S, and Eta output files</span> on spherical coordinates without
<span style="font-size:small;background-color:rgb(255,255,255);text-decoration-style:initial;text-decoration-color:initial;float:none;display:inline">mdsio</span> in the list in <span style="font-size:small;background-color:rgb(255,255,255);text-decoration-style:initial;text-decoration-color:initial;float:none;display:inline">packages.conf. I have pasted the related files as the follows. Could anyone suggest outputing
<span style="text-decoration-style:initial;text-decoration-color:initial;float:none;display:inline">U, V, W, T, S, and Eta files</span> on
<span style="text-decoration-style:initial;text-decoration-color:initial;float:none;display:inline">the curvilinear coordinates?</span></span></span></span></span></span></span></span></div><div><span style="font-size:small;background-color:rgb(255,255,255);text-decoration-style:initial;text-decoration-color:initial;float:none;display:inline"><span style="text-decoration-style:initial;text-decoration-color:initial;float:none;display:inline"><span style="font-size:small;text-decoration-style:initial;text-decoration-color:initial;background-color:rgb(255,255,255);float:none;display:inline"><span style="text-decoration-style:initial;text-decoration-color:initial;float:none;display:inline"><span style="font-size:small;background-color:rgb(255,255,255);text-decoration-style:initial;text-decoration-color:initial;float:none;display:inline"><span style="text-decoration-style:initial;text-decoration-color:initial;float:none;display:inline"><span style="font-size:small;background-color:rgb(255,255,255);text-decoration-style:initial;text-decoration-color:initial;float:none;display:inline"><span style="text-decoration-style:initial;text-decoration-color:initial;float:none;display:inline"><span><br></span></span></span></span></span></span></span></span></span></div><div><span style="font-size:small;background-color:rgb(255,255,255);text-decoration-style:initial;text-decoration-color:initial;float:none;display:inline"><span style="text-decoration-style:initial;text-decoration-color:initial;float:none;display:inline"><span style="font-size:small;text-decoration-style:initial;text-decoration-color:initial;background-color:rgb(255,255,255);float:none;display:inline"><span style="text-decoration-style:initial;text-decoration-color:initial;float:none;display:inline"><span style="font-size:small;background-color:rgb(255,255,255);text-decoration-style:initial;text-decoration-color:initial;float:none;display:inline"><span style="text-decoration-style:initial;text-decoration-color:initial;float:none;display:inline"><span style="font-size:small;background-color:rgb(255,255,255);text-decoration-style:initial;text-decoration-color:initial;float:none;display:inline"><span style="text-decoration-style:initial;text-decoration-color:initial;float:none;display:inline"><span> </span></span> Thanks much,</span></span></span></span></span></span></span></div><div><span style="font-size:small;background-color:rgb(255,255,255);text-decoration-style:initial;text-decoration-color:initial;float:none;display:inline"><span style="text-decoration-style:initial;text-decoration-color:initial;float:none;display:inline"><span style="font-size:small;text-decoration-style:initial;text-decoration-color:initial;background-color:rgb(255,255,255);float:none;display:inline"><span style="text-decoration-style:initial;text-decoration-color:initial;float:none;display:inline"><span style="font-size:small;background-color:rgb(255,255,255);text-decoration-style:initial;text-decoration-color:initial;float:none;display:inline"><span style="text-decoration-style:initial;text-decoration-color:initial;float:none;display:inline"><span style="font-size:small;background-color:rgb(255,255,255);text-decoration-style:initial;text-decoration-color:initial;float:none;display:inline"><br></span></span></span></span></span></span></span></div><div><span style="font-size:small;background-color:rgb(255,255,255);text-decoration-style:initial;text-decoration-color:initial;float:none;display:inline"><span style="text-decoration-style:initial;text-decoration-color:initial;float:none;display:inline"><span style="font-size:small;text-decoration-style:initial;text-decoration-color:initial;background-color:rgb(255,255,255);float:none;display:inline"><span style="text-decoration-style:initial;text-decoration-color:initial;float:none;display:inline"><span style="font-size:small;background-color:rgb(255,255,255);text-decoration-style:initial;text-decoration-color:initial;float:none;display:inline"><span style="text-decoration-style:initial;text-decoration-color:initial;float:none;display:inline"><span style="font-size:small;background-color:rgb(255,255,255);text-decoration-style:initial;text-decoration-color:initial;float:none;display:inline"> Yi-Chih </span></span></span></span></span></span></span></div><div><br></div><div>####################### in the manual ##################################################</div><div><div>3.5.1.1 MDSIO output files</div><div>The “traditional” output files are generated by the mdsio package. At a minimum, the instantaneous</div><div>“state” of the model is written out, which is made of the following files:</div><div>• U.00000nIter - zonal component of velocity field (m/s and positive eastward).</div><div>• V.00000nIter - meridional component of velocity field (m/s and positive northward).</div><div>• W.00000nIter - vertical component of velocity field (ocean: m/s and positive upward, atmosphere:</div><div>Pa/s and positive towards increasing pressure i.e. downward).</div><div>• T.00000nIter - potential temperature (ocean: C, atmosphere: K).</div><div>• S.00000nIter - ocean: salinity (psu), atmosphere: water vapor (g/kg).</div><div>• Eta.00000nIter - ocean: surface elevation (m), atmosphere: surface pressure anomaly (Pa).</div></div><div><br></div><div>######################## packages.conf ###############################################</div><div><div># $Header: /u/gcmpack/MITgcm/verification/rotating_tank/code/packages.conf,v 1.3 2006/09/03 23:29:19 jmc Exp $</div><div># $Name: checkpoint66k $</div><div><br></div><div>gfd</div><div>diagnostics</div><div>mdsio</div><div>mnc</div></div><div><br></div><div>######################## data.pkg ####################################################</div><div><div># Packages</div><div> &PACKAGES</div><div> useMNC=.TRUE.,</div><div> useMDSIO=.TRUE.,</div><div> &</div></div><div><br></div><div>######################## data file #####################################################</div><div><div># ====================</div><div># | Model parameters |</div><div># ====================</div><div>#</div><div># Continuous equation parameters</div><div> &PARM01</div><div> rhoRefFile='rhoLin.bin',</div><div> tRef=50*20.0,</div><div> sRef=50*0.0,</div><div># amplCF=0.0,</div><div># amplHeat=2.0,</div><div> viscAh=1.0E6,</div><div> viscAr=1.0E6,</div><div>#viscA4=1.0E-12,</div><div>#viscA4W=1.0E-12,</div><div>#diffK4T=1.0E-11,</div><div> no_slip_sides=.FALSE.,</div><div> no_slip_bottom=.FALSE.,</div><div> diffKhT=5.0E-6,</div><div> diffKrT=5.0E-6,</div><div> diffKhS=1.0E-7,</div><div> diffKrS=1.0E-7,</div><div> f0=2.531787E-5,</div><div>#omega=2,</div><div> rotationPeriod=38520.0,</div><div>#beta=0.E-11,</div><div> eosType='LINEAR',</div><div> tAlpha=2.E-4,</div><div> sBeta =0.,</div><div> gravity=9.81,</div><div> rhoConst=1.0E+3,</div><div>#rhoNil=1.0E+3,</div><div>#heatCapacity_Cp=3900.0,</div><div> implicitFreeSurface=.TRUE.,</div><div> implicitDiffusion=.TRUE.,</div><div> implicitViscosity=.TRUE.,</div><div> tempAdvScheme=77,</div><div> staggerTimeStep=.TRUE.,</div><div> saltStepping=.FALSE.,</div><div>#rigidLid=.TRUE.,</div><div>#implicitFreeSurface=.FALSE.,</div><div> nonHydrostatic=.TRUE.,</div><div> useNHMTerms=.TRUE.,</div></div><div><div> readBinaryPrec=32,</div><div>#useSingleCpuIO=.TRUE.,</div><div> &</div><div><br></div><div># Elliptic solver parameters</div><div> &PARM02</div><div> cg2dMaxIters=1000,</div><div> cg2dTargetResidual=1.E-13,</div><div> cg3dMaxIters=40,</div><div> cg3dTargetResidual=1.E-13,</div><div> &</div><div><br></div><div># Time stepping parameters</div><div> &PARM03</div><div> nIter0=0,</div><div> nTimeSteps=5000,</div><div>#nTimeSteps=36000000,</div><div> deltaT=150,</div><div> abEps=0.1,</div><div> pChkptFreq=300000.0,</div><div> chkptFreq=150000.0,</div><div> dumpFreq=75000.0,</div><div> monitorSelect=3000,</div><div> monitorFreq=3000,</div><div> &</div><div><br></div><div># Gridding parameters</div><div> &PARM04</div><div> usingCurvilinearGrid=.TRUE.,</div><div> deepAtmosphere=.TRUE.,</div><div> rSphere=60000.E3,</div><div> delR=50*200.E3,</div><div> delX=320*0.25,</div><div> delY=320*0.25,</div><div># horizGridFile=’grid_360’,</div><div> ygOrigin=10.,</div><div> &</div><div><br></div><div># Input datasets</div><div> &PARM05</div><div>#surfQfile='SQCartHD.bin',</div></div><div><div># geothermalFile='Geotherm.bin',</div><div> bathyFile='BEDsphere.bin',</div><div> hydrogThetaFile='Tinitsphere.bin',</div><div> &</div></div><div><br></div><div>#######################################################################################</div><div>
<span style="font-size:small;background-color:rgb(255,255,255);text-decoration-style:initial;text-decoration-color:initial;float:none;display:inline">forrtl: severe (19): invalid reference to variable in NAMELIST input, unit 11, file /project/6001267/MITgcm/MITgcm_c66k/verification/rotating_tank2/run_n_320_253/scratch1.000000009, line 3, position 9</span>
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