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<p>Hi guys,</p>
<p>Thanks for your help - problem solved ;)!</p>
<p>I didn't know about the existence of the genmake.log file before,
but it pointed me directly to a typo in the opt-file......</p>
<p>As J-M suggested, it had nothing to do with netcdf...hence my
confusion.</p>
<p>Thanks again!</p>
<p>A></p>
<p><br>
</p>
<br>
<div class="moz-cite-prefix">On 12/08/17 21:22, Chris Hill wrote:<br>
</div>
<blockquote type="cite"
cite="mid:CAOLSJZVmHc0SJHzk_5OrM8cLz_dbLffuSmgYg2w99Heq=Uh+8Q@mail.gmail.com">
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<div dir="auto">Andreas</div>
<div dir="auto"><br>
</div>
<div dir="auto">Can you post a copy of the file genmake.log
after you get the output you posted. </div>
<div dir="auto"><br>
</div>
<div dir="auto">Chris</div>
<br>
<div class="gmail_quote">
<div>On Fri, Aug 11, 2017 at 23:25 Andreas Klocker <<a
href="mailto:andreas.klocker@utas.edu.au"
moz-do-not-send="true">andreas.klocker@utas.edu.au</a>>
wrote:<br>
</div>
<blockquote class="gmail_quote" style="margin:0 0 0
.8ex;border-left:1px #ccc solid;padding-left:1ex">Hi guys,<br>
<br>
Maybe someone can help...<br>
<br>
I'm trying to use genmake (see below) before compiling the
MITgcm. For<br>
some reason I don't understand it has some issues with
netcdf (again,<br>
see the genmake message below). This only started to be a
problem recently.<br>
<br>
A colleague of mine, running the same checkpoint (62), with
the same<br>
opt-file, on the same machine, same netcdf_root, with the
same modules<br>
loaded, does not have that problem. The same problem also
appears with<br>
an older checkpoint.<br>
<br>
Is there any way I can get a more detailed error log
pointing me towards<br>
this problem? Or has anyone got any hints which might help?
Without a<br>
more detailed error message I'm not sure where to start
looking...even<br>
though I assume it's something trivial...<br>
<br>
cheers,<br>
<br>
Andreas<br>
<br>
<br>
<br>
GENMAKE :<br>
<br>
A program for GENerating MAKEfiles for the MITgcm project.<br>
For a quick list of options, use "genmake2 -h"<br>
or for more detail see the Developer's HOWTO manual at:<br>
<a href="http://mitgcm.org/public/docs.html"
rel="noreferrer" target="_blank" moz-do-not-send="true">http://mitgcm.org/public/docs.html</a><br>
<br>
=== Processing options files and arguments ===<br>
getting local config information: none found<br>
Warning: ROOTDIR was not specified ; try using a local copy
of MITgcm<br>
found at "../../.."<br>
getting OPTFILE information:<br>
using<br>
OPTFILE="../../../tools/build_options/linux_ia64_ifort+mpi_raijin"<br>
getting AD_OPTFILE information:<br>
using
AD_OPTFILE="../../../tools/adjoint_options/adjoint_default"<br>
<br>
=== Checking system libraries ===<br>
Do we have the system() command using ifort... no<br>
Do we have the fdate() command using ifort... no<br>
Do we have the etime() command using ifort... no<br>
Can we call simple C routines (here, "cloc()") using
ifort... no<br>
Can we unlimit the stack size using ifort... no<br>
Can we register a signal handler using ifort... no<br>
Can we use stat() through C calls... no<br>
Can we create NetCDF-enabled binaries... no<br>
<br>
=== Setting defaults ===<br>
Adding MODS directories: ../code/<br>
Making source files in eesupp from templates<br>
Making source files in pkg/exch2 from templates<br>
Making source files in pkg/regrid from templates<br>
<br>
=== Determining package settings ===<br>
getting package dependency info from
../../../pkg/pkg_depend<br>
getting package groups info from
../../../pkg/pkg_groups<br>
checking list of packages to compile:<br>
using PKG_LIST="../code//packages.conf"<br>
before group expansion packages are: gfd ptracers
diagnostics<br>
timeave mnc obcs layers kpp<br>
replacing "gfd" with: mom_common mom_fluxform
mom_vecinv<br>
generic_advdiff debug mdsio rw monitor<br>
after group expansion packages are: mom_common
mom_fluxform<br>
mom_vecinv generic_advdiff debug mdsio rw monitor ptracers
diagnostics<br>
timeave mnc obcs layers kpp<br>
applying DISABLE settings<br>
applying ENABLE settings<br>
packages are: debug diagnostics generic_advdiff kpp
layers mdsio<br>
mnc mom_common mom_fluxform mom_vecinv monitor obcs ptracers
rw timeave<br>
*********************************************************************<br>
WARNING: the "mnc" package was enabled but tests failed to
compile<br>
NetCDF applications. Please check that:<br>
<br>
1) NetCDF is correctly installed for this compiler and<br>
2) the LIBS variable (within the "optfile") specifies the
correct<br>
NetCDF library to link against.<br>
<br>
Due to this failure, the "mnc" package is now DISABLED.<br>
*********************************************************************<br>
applying package dependency rules<br>
packages are: debug diagnostics generic_advdiff kpp
layers mdsio<br>
mom_common mom_fluxform mom_vecinv monitor obcs ptracers rw
timeave<br>
Adding STANDARDDIRS='eesupp model'<br>
Searching for *OPTIONS.h files in order to warn about the
presence<br>
of "#define "-type statements that are no longer
allowed:<br>
found CPP_OPTIONS="./CPP_OPTIONS.h"<br>
found CPP_EEOPTIONS="./CPP_EEOPTIONS.h"<br>
Creating the list of files for the adjoint compiler.<br>
<br>
=== Creating the Makefile ===<br>
setting INCLUDES<br>
Determining the list of source and include files<br>
Writing makefile: Makefile<br>
Add the source list for AD code generation<br>
Making list of "exceptions" that need ".p" files<br>
Making list of NOOPTFILES<br>
Add rules for links<br>
Adding makedepend marker<br>
<br>
=== Done ===<br>
<br>
--<br>
===============================================================<br>
Dr. Andreas Klocker<br>
ARC Fellow (DECRA)<br>
<br>
Institute for Marine and Antarctic Studies<br>
University of Tasmania<br>
20 Castray Esplanade<br>
Battery Point, TAS<br>
7004 Australia<br>
<br>
M: +61 437 870 182<br>
W: <a
href="https://sites.google.com/site/andreasoceanographywebsite"
rel="noreferrer" target="_blank" moz-do-not-send="true">https://sites.google.com/site/andreasoceanographywebsite</a><br>
skype: andiklocker<br>
===============================================================<br>
<br>
<br>
<br>
University of Tasmania Electronic Communications Policy
(December, 2014).<br>
This email is confidential, and is for the intended
recipient only. Access, disclosure, copying, distribution,
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offence. Please delete if obtained in error and email
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</blockquote>
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<br>
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</blockquote>
<br>
<pre class="moz-signature" cols="72">--
===============================================================
Dr. Andreas Klocker
ARC Fellow (DECRA)
Institute for Marine and Antarctic Studies
University of Tasmania
20 Castray Esplanade
Battery Point, TAS
7004 Australia
M: +61 437 870 182
W: <a class="moz-txt-link-freetext" href="https://sites.google.com/site/andreasoceanographywebsite">https://sites.google.com/site/andreasoceanographywebsite</a>
skype: andiklocker
===============================================================</pre>
<p style="font-size:10pt; line-height:10pt; font-family: Calibri,sans-serif;"><br><br><span style="font-size:10.0pt">University of Tasmania Electronic Communications Policy (December, 2014). <br>This email is confidential, and is for the intended recipient only. Access, disclosure, copying, distribution, or reliance on any of it by anyone outside the intended recipient organisation is prohibited and may be a criminal offence. Please delete if obtained in error and email confirmation to the sender. The views expressed in this email are not necessarily the views of the University of Tasmania, unless clearly intended otherwise.<br>.</span></p></body>
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