[MITgcm-support] Compiling error when using MNC package

[Yankun Gong]

Hi Martin,

Thanks for your suggestions.

I have checked the genmake.log file and found the NetCDF libs were
successful checked. The details about NetCDF libs in genmake.log are shown
below:

running: check_netcdf_libs()
===  genmake_tnc.F  >>>
      program fgennc
#include "netcdf.inc"
      integer iret, ncid, xid
      iret = nf_create('genmake_tnc.nc', NF_CLOBBER, ncid)
      IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
      iret = nf_def_dim(ncid, 'X', 11, xid)
      IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
      iret = nf_close(ncid)
      IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
      end
<<<  genmake_tnc.F  ===
cat genmake_tnc.F |  cpp -traditional -P -DWORDLENGTH=4 -D_BYTESWAPIO
-DHAVE_LAPACK -DALLOW_USE_MPI -DHAVE_SYSTEM -DHAVE_FDATE -DHAVE_SETRLSTK
-DHAVE_SIGREG -DHAVE_STAT -I/opt/cray/netcdf-hdf5parallel/
4.3.3.1/cray/83/include -I${MPICH_DIR}/include
ftn  -O3 -hfp3 -Oipa5 -c genmake_tnc.f  \
  &&  ftn  -O3 -hfp3 -Oipa5 -o genmake_tnc.o
-L/opt/cray/netcdf-hdf5parallel/4.3.3.1/cray/83/lib -L${MPICH_DIR}/lib
/opt/cray/hdf5-parallel/1.8.14/CRAY/8.3/lib/libhdf5_parallel.a(H5PL.o): In
function `H5PL__open$$CFE_id_56395c9c_01603595':
/b/ulib/hdf5/1.8.14/rpm/BUILD/cray-hdf5-1.8.14-cce1-parallel/src/H5PL.c:536:
warning: Using 'dlopen' in statically linked applications requires at
runtime the shared libraries from the glibc version used for linking
check_netcdf: successful
 --> set HAVE_NETCDF='t'

By the way, the attachment is genmake.log file.

Thank again for your help.

Regards,
Yankun



*Yankun Gong*
School of Civil, Environmental and Mining Engineering & UWA Oceans
Institute
The University of Western Australia, Perth WA 6009 Australia
*T  *+61 0420 831 087  •  *E  *yankun.gong at research.uwa.edu.au

On 12 May 2017 at 15:59, Martin Losch <Martin.Losch at awi.de> wrote:

> Hi Yakun,
>
> the error message means, that the netcdf library is not found or that the
> objects in the libary do not match the “name mangling convention” (I hope
> that I got this right).
>
> For debugging, I usually find it the easiest to check the output of
> genmake2: which of the tests fail? then have a look at genmake.log and
> check out the details, why and where they fail. I assume that the netcdf
> example will already fail in that test and you can use the commands in
> genmake.log to create short test that let’s you play with library settings
> until it works.
>
> Martin
>
> > On 12. May 2017, at 08:55, Yankun Gong <yankun.gong at research.uwa.edu.au>
> wrote:
> >
> > Hi all,
> >
> > When I decide to compile MITgcm model with mnc package on Cray System,
> errors occur on the third/last step of compilation (make). In fact, the
> model can successfully compile without mnc package and I am sure that I
> have added the Libs of NetCDF on build options. The compiling errors are
> shown below:
> >
> > MNC_CW_READWRITE_I.o: In function `mnc_cw_i_w_s_':
> > /scratch/pawsey0106/gongyk/MITgcm_c66g/test_IW/build/MNC_CW_READWRITE_I.f:361:
> undefined
> > […]
> > /scratch/pawsey0106/gongyk/MITgcm_c66g/test_IW/build/mnc_var.f:13005:
> undefined reference to `nf_put_vara_int_'
> > make[1]: *** [mitgcmuv] Error 1
> > make[1]: Leaving directory `/scratch/pawsey0106/gongyk/
> MITgcm_c66g/test_IW/build'
> > make: *** [fwd_exe_target] Error 2
> >
> >
> > Any help and suggestions are welcome!
> >
> > Thanks
> > Yankun
> >
> >
> > Yankun Gong
> > School of Civil, Environmental and Mining Engineering & UWA Oceans
> Institute
> > The University of Western Australia, Perth WA 6009 Australia
> > T  +61 0420 831 087  •  E  yankun.gong at research.uwa.edu.au
> > _______________________________________________
> > MITgcm-support mailing list
> > MITgcm-support at mitgcm.org
> > http://mitgcm.org/mailman/listinfo/mitgcm-support
>
>
> _______________________________________________
> MITgcm-support mailing list
> MITgcm-support at mitgcm.org
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