[MITgcm-support] EXF
小平翼
kodaira at edu.k.u-tokyo.ac.jp
Fri Dec 15 08:20:48 EST 2017
Hi Martin,
Following your suggestion, the problem was totally solved.
I haven’t needed to use the NOOPTFLAGS, but it is quite helpful in future.
Thank you so much,
Tsubasa
2017年12月11日(月) 22:24 Martin Losch <Martin.Losch at awi.de>:
> Hi Tsubasa,
>
> so it was a compiler problem? That’s not unusual at all. In your build
> options file, you can set the following two flags: NOOPTFLAGS and
> NOOPTFILES. For example, in the default linux_amd64_ifort (in
> tools/build_options), they are set to
>
> NOOPTFLAGS='-O0 -g'
> NOOPTFILES=‘'
>
> but you could set them in your optfile to
> NOOPTFLAGS='-OXXX'
> NOOPTFILES=‘exf_interpolation.f’
> where XXX should be the optimization level that works for you (remember to
> regenerate the makefile: make makefile && make depend) before compilation.
>
> Martin
>
>
>
>
> > On 11. Dec 2017, at 13:53, 小平翼 <kodaira at edu.k.u-tokyo.ac.jp> wrote:
> >
> > Hi Martin,
> >
> > I was also thinking about the compiler problem. I have used ifort based
> compiler for a HPC. When I changed to gcc, it worked without any problem. I
> visually confirmed the atmospheric forcing field is surely interpolated to
> model grids.
> >
> > Many thanks for your help.
> >
> > I may also test several different compiler option for ifort and post if
> I find something helpful for MITgcm users.
> >
> > Best,
> >
> > Tsubasa
> >
> > 2017-12-11 21:44 GMT+09:00 Martin Losch <Martin.Losch at awi.de>:
> > Hi again,
> >
> > I am not sure what’s happening. Can you try with compiler optimization
> turned off?
> >
> > If that fails, maybe I can try to reproduce your problem if you send me
> your configuration (code and input directory, but without any big files,
> please, just the namelist files) maybe a short python script to generate
> your domain and your forcing fields (with constant values).
> >
> > Martin
> >
> >
> > > On 11. Dec 2017, at 11:33, 小平翼 <kodaira at edu.k.u-tokyo.ac.jp> wrote:
> > >
> > > Hello Martin,
> > >
> > > I highly appreciate your response. What I did so far are
> > > • Forcing the model with realistic 5km high resolution
> atmospheric forcing (MSM, Japan Meteorological Agency) with the on-the-fly
> interpolation ---> model blew up and noticed EXF monitor part shows strange
> value
> > > • Forcing the model with the model with only atmospheric
> temperature set to constant (300). The grid size of the input atmospheric
> data is the same as 1.
> > > • Checking the results with diagnostic package ---> When I
> visualized the output (atemp) , it seems (i) land mask working properly
> (ii) the figure doesn't show any organized pattern. so many unnatural
> stripes.
> > > • Going down to the codes: looking at exf_interp.F and
> exp_interpolate.F ---> I didn't fully understand the code yet, but I feel
> following part for the bilinear interpolation possibly increase the atemp
> value 4 times larger if LAGRAN external function return ones for some
> reason.
> > >
> > > DO k=1,2
> > > ew_val(k) = arrayin(w_ind(i,j) ,s_ind(i,j)+k-1)
> > > & *LAGRAN(1,xG(i,j,bi,bj),px_ind,sp)
> > > & + arrayin(w_ind(i,j)+1,s_ind(i,j)+k-1)
> > > & *LAGRAN(2,xG(i,j,bi,bj),px_ind,sp)
> > > arrayout(i,j,bi,bj) = arrayout(i,j,bi,bj)
> > > & + ew_val(k)*LAGRAN(k,yG(i,j,bi,bj),py_ind,sp)
> > > ENDDO
> > > I should mention that I originally prepared interpolated atmospheric
> forcing file and run the model without on-the-fly function. It seemed to
> work as I wished. It however require a lot of time to interpolate the field
> using scipy.interpolate.griddata in python. This is why I wanted to use
> on-the-fly function.
> > >
> > > The reason why I used high-resolution atmospheric forcing is because I
> plan to use MITgcm for coastal short-time scale processes such as tides and
> surges with grid resolution about 1km. I have tried to automate creating
> input files for MITgcm to use the model with multiple study areas.
> > >
> > > Best,
> > >
> > > 2017-12-11 18:44 GMT+09:00 Martin Losch <Martin.Losch at awi.de>:
> > > Hi Tsubasa,
> > > I don’t see anything obviously wrong in your data.exf. I forgot to ask
> for the EXF_OPTIONS.h file, but I assume that you have set
> USE_EXF_INTERPOLATION, etc.
> > >
> > > This is what I would do:
> > > write (all) your interpolated exf forcing fields to disk for your
> first timestep using the diagnostics package (i.e. data.diagnostics) and
> see if the patterns in the interpolated fields tell you something. If you
> haven’t used the diagnostics package yet, it’s a good time to learn how to
> use it.
> > >
> > > I find it very puzzling that your min/max temperatuers are exactly
> 600/1200. Do I understand you correctly, that you input field is constant
> at 300K?
> > >
> > > I have a principle question: your forcing data grid appears very fine
> (atemp_lon_inc = 0.0625). What is your model grid resolution, that you want
> such a high grid resolution for the forcing? Typically one would use the
> interpolation to interpolate from coarse forcing data grids to a high
> resolution model grid in order to avoid storing the forcing on the high
> resolution grid.
> > >
> > > Martin
> > >
> > > > On 11. Dec 2017, at 09:49, 小平翼 <kodaira at edu.k.u-tokyo.ac.jp> wrote:
> > > >
> > > > Hello Martin,
> > > >
> > > > I copied and pasted my data.exf below. The atmospheric temperature
> field (atemp) of my input file for EXF package was intentionally set to
> 300 K for a test. When I set the realistic temperature fields, the max/min
> values are similar (i.e., about 1200/600). The wind velocity is also
> strange, showing more than 100.
> > > >
> > > > Best,
> > > >
> > > > Tsubasa
> > > >
> > > >
> > > > # *********************
> > > > # External Forcing Data
> > > > # *********************
> > > > &EXF_NML_01
> > > > # useExfCheckRange = .TRUE.,
> > > > useExfCheckRange = .FALSE.,
> > > > # readStressOnCgrid = .TRUE.,
> > > > repeatPeriod = 0,
> > > > exf_iprec = 64,
> > > > &
> > > >
> > > > # *********************
> > > > &EXF_NML_02
> > > > #
> > > > # hfluxstartdate1 = 20170901,
> > > > # hfluxstartdate2 = 000000,
> > > > # hfluxperiod = 3600.0,
> > > > #
> > > > # sfluxstartdate1 = 20170901,
> > > > # sfluxstartdate2 = 000000,
> > > > # sfluxperiod = 3600.0,
> > > > #
> > > > # ustressstartdate1 = 20170901,
> > > > # ustressstartdate2 = 000000,
> > > > # ustressperiod = 3600.0,
> > > > #
> > > > # vstressstartdate1 = 20170901,
> > > > # vstressstartdate2 = 000000,
> > > > # vstressperiod = 3600.0,
> > > > #
> > > > atempstartdate1 = 20170901,
> > > > atempstartdate2 = 000000,
> > > > atempperiod = 3600.0,
> > > >
> > > > # apressurestartdate1 =
> > > > # apressurestartdate2 =
> > > > # apressureperiod =
> > > >
> > > > aqhstartdate1 = 20170901,
> > > > aqhstartdate2 = 000000,
> > > > aqhperiod = 3600.0,
> > > > #
> > > > #evapstartdate1 = 20170901,
> > > > #evapstartdate2 = 000000,
> > > > #evapperiod = 3600.0,
> > > > #
> > > > precipstartdate1 = 20170901,
> > > > precipstartdate2 = 000000,
> > > > precipperiod = 3600.0,
> > > > #
> > > > uwindstartdate1 = 20170901,
> > > > uwindstartdate2 = 000000,
> > > > uwindperiod = 3600.0,
> > > > #
> > > > vwindstartdate1 = 20170901,
> > > > vwindstartdate2 = 000000,
> > > > vwindperiod = 3600.0,
> > > > #
> > > > # swfluxstartdate1 = 20170901,
> > > > # swfluxstartdate2 = 000000,
> > > > # swfluxperiod = 3600.0,
> > > > #
> > > > # lwfluxstartdate1 = 20170901,
> > > > # lwfluxstartdate2 = 000000,
> > > > # lwfluxperiod = 3600.0,
> > > > #
> > > > swdownstartdate1 = 20170901,
> > > > swdownstartdate2 = 000000,
> > > > swdownperiod = 86400.0,
> > > > #
> > > > lwdownstartdate1 = 20170901,
> > > > lwdownstartdate2 = 000000,
> > > > lwdownperiod = 86400.0,
> > > > #
> > > > # climsststartdate1 = 20170901,
> > > > # climsststartdate2 = 000000,
> > > > # climsstperiod = 3600.0,
> > > > # climsstTauRelax = 0.0,
> > > > #
> > > > # climsssstartdate1 = 20170901,
> > > > # climsssstartdate2 = 000000,
> > > > # climsssperiod = 3600.0,
> > > > # climsssTauRelax = 0.0,
> > > > #
> > > > # hfluxfile = 'hsbc.bin',
> > > > hfluxfile = ' ',
> > > > sfluxfile = ' ',
> > > > ustressfile = ' ',
> > > > vstressfile = ' ',
> > > > atempfile = './20170901/temp.surf',
> > > > aqhfile = './20170901/rh.surf',
> > > > uwindfile = './20170901/u.surf',
> > > > vwindfile = './20170901/v.surf',
> > > > evapfile = ' ',
> > > > # apressurefile = './20170901/psea.surf'
> > > > precipfile = './20170901/r1h.surf',
> > > > lwfluxfile = ' ',
> > > > swfluxfile = ' ',
> > > > lwdownfile = './20170901/dlwrf.surf',
> > > > swdownfile = './20170901/dswrf.surf',
> > > > runoffFile = ' '
> > > > climsstfile = ' ',
> > > > climsssfile = ' ',
> > > > #
> > > > &
> > > >
> > > > # *********************
> > > > &EXF_NML_03
> > > > &
> > > >
> > > > # *********************
> > > > # old open64 compiler (4.2.1) cannot skip this namelist to read in
> the next one;
> > > > # comment out this namelist (not read).
> > > > &EXF_NML_04
> > > > atemp_lon0 = 124.0,
> > > > atemp_lon_inc = 0.0625,
> > > > atemp_lat0 = 22.45,
> > > > atemp_lat_inc = 400*0.05,
> > > > atemp_nlon = 401,
> > > > atemp_nlat = 401,
> > > > aqh_lon0 = 124.0,
> > > > aqh_lon_inc = 0.0625,
> > > > aqh_lat0 = 22.45,
> > > > aqh_lat_inc = 400*0.05,
> > > > aqh_nlon = 401,
> > > > aqh_nlat = 401,
> > > > precip_lon0 = 124.0,
> > > > precip_lon_inc = 0.0625,
> > > > precip_lat0 = 22.45,
> > > > precip_lat_inc = 400*0.05,
> > > > precip_nlon = 401,
> > > > precip_nlat = 401,
> > > > uwind_lon0 = 124.0,
> > > > uwind_lon_inc = 0.0625,
> > > > uwind_lat0 = 22.45,
> > > > uwind_lat_inc = 400*0.05,
> > > > uwind_nlon = 401,
> > > > uwind_nlat = 401,
> > > > vwind_lon0 = 124.0,
> > > > vwind_lon_inc = 0.0625,
> > > > vwind_lat0 = 22.45,
> > > > vwind_lat_inc = 400*0.05,
> > > > vwind_nlon = 401,
> > > > vwind_nlat = 401,
> > > > swdown_lon0 = 114.375,
> > > > swdown_lon_inc = 1.875,
> > > > swdown_lat0 = 12.3808,
> > > > swdown_lat_inc = 1.9047,
> > > > swdown_nlon = 16,
> > > > swdown_nlat = 14,
> > > > lwdown_lon0 = 114.375,
> > > > lwdown_lon_inc = 1.875,
> > > > lwdown_lat0 = 12.3808,
> > > > lwdown_lat_inc = 1.9047,
> > > > lwdown_nlon = 16,
> > > > lwdown_nlat = 14,
> > > > &
> > > >
> > > > # *********************
> > > > &EXF_NML_OBCS
> > > > obcsSstartdate1 = 20170901,
> > > > obcsSstartdate2 = 000000,
> > > > obcsSperiod = 86400.0,
> > > > #
> > > > obcsNstartdate1 = 20170901,
> > > > obcsNstartdate2 = 000000,
> > > > obcsNperiod = 86400.0,
> > > > #
> > > > obcsWstartdate1 = 20170901,
> > > > obcsWstartdate2 = 000000,
> > > > obcsWperiod = 86400.0,
> > > > #
> > > > obcsEstartdate1 = 20170901,
> > > > obcsEstartdate2 = 000000,
> > > > obcsEperiod = 86400.0,
> > > > #
> > > > # siobSstartdate1 = 20170901,
> > > > # siobSstartdate2 = 000000,
> > > > # siobSperiod = 86400.0,
> > > > #
> > > > # siobNstartdate1 = 20170901,
> > > > # siobNstartdate2 = 000000,
> > > > # siobNperiod = 86400.0,
> > > > #
> > > > # siobWstartdate1 = 20170901,
> > > > # siobWstartdate2 = 000000,
> > > > # siobWperiod = 86400.0,
> > > > &
> > > >
> > > >
> > > >
> > > > 2017-12-11 17:42 GMT+09:00 Martin Losch <Martin.Losch at awi.de>:
> > > > Tsubasa,
> > > >
> > > > can you please provide your complete data.exf. Why would you have a
> min/max of 600/1200 K, what are the max/min of your input fields?
> > > > this is probably not related to the interpolation but rather to
> either your input files rr the settings in data.exf.
> > > >
> > > > Martin
> > > >
> > > > > On 11. Dec 2017, at 04:32, 小平翼 <kodaira at edu.k.u-tokyo.ac.jp>
> wrote:
> > > > >
> > > > > Hello all,
> > > > >
> > > > > I was trying to use EXF package with the on-the-fly function.
> Unfortuntately, it didn't work as I expected. The values are set much
> larger. As a quick check, I set the atmospheric temperature fields as
> constant, 300. The monitor function however shows that the maximum of atemp
> is 4times larger and the mean is also 2 times larger, as follows.
> > > > >
> > > > > (PID.TID 1000.0001) %MON exf_atemp_max =
> 1.2000000000000E+03
> > > > > (PID.TID 1000.0001) %MON exf_atemp_min =
> 6.0000000000027E+02
> > > > > (PID.TID 1000.0001) %MON exf_atemp_mean =
> 9.1028890280222E+02
> > > > > (PID.TID 1000.0001) %MON exf_atemp_sd =
> 1.7286119388930E+02
> > > > > (PID.TID 1000.0001) %MON exf_atemp_del2 =
> 3.4626736833088E-01
> > > > >
> > > > > I'm wondering I may be missing something.
> > > > > Any advice or help would be appreciated.
> > > > > Related part of the data.exf is following
> > > > >
> > > > > &EXF_NML_04
> > > > > atemp_lon0 = 124.0,
> > > > > atemp_lon_inc = 0.25,
> > > > > atemp_lat0 = 22.45,
> > > > > atemp_lat_inc = 100*0.2,
> > > > > atemp_nlon = 101,
> > > > > atemp_nlat = 101,
> > > > >
> > > > > Thank you,
> > > > >
> > > > > Tsubasa
> > > > > --
> > > > >
> > > > > _______________________________________________
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> > > > > MITgcm-support at mitgcm.org
> > > > > http://mailman.mitgcm.org/mailman/listinfo/mitgcm-support
> > > >
> > > > _______________________________________________
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> > > >
> > > >
> > > >
> > > > --
> > > >
> ///////////////////////////////////////////////////////////////////////////////////////////////////////
> > > > 小平翼 助教、海洋技術環境学専攻、東大院新領域
> > > > 居室 〒277-8563 千葉県柏市柏の葉5-1-5 環境棟 214
> > > > Tsubasa Kodaira (Ph.D), Assistant Professor
> > > > Department of Ocean Technology, Policy and Environment
> > > > Graduate School of Frontier Sciences, The University of Tokyo
> > > > TEL 04-7136-4672, E-mail kodaira at edu.k.u-tokyo.ac.jp
> > > >
> ///////////////////////////////////////////////////////////////////////////////////////////////////////
> > > >
> > > >
> > > > _______________________________________________
> > > > MITgcm-support mailing list
> > > > MITgcm-support at mitgcm.org
> > > > http://mailman.mitgcm.org/mailman/listinfo/mitgcm-support
> > >
> > > _______________________________________________
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> > >
> > >
> > >
> > > --
> > >
> ///////////////////////////////////////////////////////////////////////////////////////////////////////
> > > 小平翼 助教、海洋技術環境学専攻、東大院新領域
> > > 居室 〒277-8563 千葉県柏市柏の葉5-1-5 環境棟 214
> > > Tsubasa Kodaira (Ph.D), Assistant Professor
> > > Department of Ocean Technology, Policy and Environment
> > > Graduate School of Frontier Sciences, The University of Tokyo
> > > TEL 04-7136-4672, E-mail kodaira at edu.k.u-tokyo.ac.jp
> > >
> ///////////////////////////////////////////////////////////////////////////////////////////////////////
> > >
> > >
> > > _______________________________________________
> > > MITgcm-support mailing list
> > > MITgcm-support at mitgcm.org
> > > http://mailman.mitgcm.org/mailman/listinfo/mitgcm-support
> >
> > _______________________________________________
> > MITgcm-support mailing list
> > MITgcm-support at mitgcm.org
> > http://mailman.mitgcm.org/mailman/listinfo/mitgcm-support
> >
> >
> >
> > --
> >
> ///////////////////////////////////////////////////////////////////////////////////////////////////////
> > 小平翼 助教、海洋技術環境学専攻、東大院新領域
> > 居室 〒277-8563 千葉県柏市柏の葉5-1-5 環境棟 214
> > Tsubasa Kodaira (Ph.D), Assistant Professor
> > Department of Ocean Technology, Policy and Environment
> > Graduate School of Frontier Sciences, The University of Tokyo
> > TEL 04-7136-4672, E-mail kodaira at edu.k.u-tokyo.ac.jp
> >
> ///////////////////////////////////////////////////////////////////////////////////////////////////////
> >
> >
> > _______________________________________________
> > MITgcm-support mailing list
> > MITgcm-support at mitgcm.org
> > http://mailman.mitgcm.org/mailman/listinfo/mitgcm-support
>
> _______________________________________________
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> http://mailman.mitgcm.org/mailman/listinfo/mitgcm-support
>
--
///////////////////////////////////////////////
////////////////////////////////////////////////////////
小平翼 助教、海洋技術環境学専攻、東大院新領域
居室 〒277-8563 千葉県柏市柏の葉5-1-5 環境棟 214
Tsubasa Kodaira (Ph.D), Assistant Professor
Department of Ocean Technology, Policy and Environment
Graduate School of Frontier Sciences, The University of Tokyo
TEL 04-7136-4672, E-mail kodaira at edu.k.u-tokyo.ac.jp
///////////////////////////////////////////////
////////////////////////////////////////////////////////
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