[MITgcm-support] commands

[Dimitris Menemenlis]

If you followed the instuctions below, in particular "./testreport -j 4 -t global_ocean.cs32x15”
Then you already have run the MITgcm!

I suggest you look at documentation for next steps: http://mitgcm.org/public/r2_manual/latest/
and in particular: http://mitgcm.org/public/r2_manual/latest/online_documents/node88.html

Cheers, Dimitris

> On Oct 21, 2016, at 12:37 PM, smaeilpour <saeid_gal at yahoo.com> wrote:
> 
> Hello, 
> I've installed MITgcm on Mac OS,so I need the commands for  running model. If it'd be possible then, would you send me it as a text file?
> 
> Thank you in advance
> saeid
> 
> 
> 
> 
> 
> 
> --------------------------------------------
> On Tue, 10/18/16, Dimitris Menemenlis <dmenemenlis at gmail.com> wrote:
> 
> Subject: Re: [MITgcm-support] Help.. Install MITgcm on Mac OS
> To: "MITgcm Support" <mitgcm-support at mitgcm.org>
> Date: Tuesday, October 18, 2016, 1:33 AM
> 
> Hi Saeid, lots of ways to
> install on Mac OS-X.
> 
> Last
> time I installed natively (November 2015 on El Capitan)
> I had to get cvs (not 100% needed, but useful
> if you like to get updates)
> gfortran, and
> xcode.  So instructions are:
> 
> - put cvs in /usr/local/bin from:
>   http://jwooten37830.com/blog/?p=325
>   http://jwooten37830.com/usr_4.2.zip
> 
> # Install gfortran 5.2
> # https://gcc.gnu.org/wiki/GFortranBinaries
> # http://coudert.name/software/gfortran-5.2-Yosemite.dmg
> 
> # Install Xcode from App
> Store
> xcode-select --install
> 
> # Now you can use cvs to get
> code and run one of the verification experiments.
> # Instructions below assume you use sh or
> bash:
> export CVSROOT=':pserver:cvsanon at mitgcm.org:/u/gcmpack'
> cvs login # enter the CVS password:
> "cvsanon"
> cvs co MITgcm_code
> cvs co MITgcm/verification/testreport
> cvs co
> MITgcm/verification/tutorial_held_suarez_cs
> cvs co
> MITgcm/verification/global_ocean.cs32x15
> cd
> MITgcm/verification
> ./testreport -j 4 -t
> global_ocean.cs32x15
> 
> 
>>>>>>>>>>>>>>> 
> 
> More recently, I was
> introduced to the wonderful world of virtual machines by one
> of the MIT czars.
> In case you want to go the
> virtual machine route, here is instructions for a *buntu
> installation:
> 
> # Set up a
> Lubuntu 16.04 virtual machine under VirtualBox
> #   Get VirtualBox from https://www.virtualbox.org/wiki/Downloads
> #   Get
> lubuntu-16.04.1-desktop-amd64.iso from https://help.ubuntu.com/community/Lubuntu/GetLubuntu
> #   Start VirtualBox and set-up
> virtual machine
> #     New
> #       Name: lubuntu-16.04
> #       Type: Linux
> #       Version: Ubuntu
> (64-bit)
> #       Memory size:
> 2048 MB
> #       Create a
> virtual hard disk now
> #   
>    Hard disk file type: VDI (VirtualBox Disk
> Image)
> #       Storage on
> physical hard disk: Fixed size
> #   
>    File location and size: 16.00 GB
> #     Settings
> # 
>      General
> #     
>    Advanced
> #       
>    Shared Clipboard: Bidirectional
> #           Drag'n'Drop:
> Bidirectional
> #   
>    System/Processor
> #     
>    Processors: 4 CPUs
> #     
>    Execution Cap: 100%
> #   
>    Storage
> #     
>    Controller: IDE (click on circle with green
> plus)
> #         Choose disk:
> Downloads/lubuntu-16.04.1-desktop-amd64.iso
> #     Start
> 
> # Install Lubuntu 16.04
> #   Download Updates; Install
> third-party software
> #   Erase
> disk and install Lubuntu
> #   Your
> name: WHATEVER
> #   Password:
> WHATEVER
> 
> # Packages needed
> for VirtualBox to run smoothly
> sudo apt
> install virtualbox-guest-dkms
> sudo adduser
> heracles vboxsf
> sudo reboot
> 
> # Extra packages needed to get
> and run MITgcm
> sudo apt install cvs
> sudo apt install gfortran
> sudo
> apt install libopenmpi-dev # needed for parallel run of
> MITgcm
> 
> # Next you can load
> and run MITgcm, e.g.,
> export
> CVSROOT=':pserver:cvsanon at mitgcm.org:/u/gcmpack'
> cvs login # enter the CVS password:
> "cvsanon"
> cvs co MITgcm_code
> cvs co MITgcm/verification/testreport
> cvs co
> MITgcm/verification/tutorial_held_suarez_cs
> cvs co
> MITgcm/verification/global_ocean.cs32x15
> cd
> MITgcm/verification
> ./testreport -j 4 -t
> global_ocean.cs32x15
> ./testreport -j 4 -mpi
> -t global_ocean.cs32x15