[MITgcm-support] Segmentation Fault

[Anthony Coletti]

Hey Ryan,

I was just writing back to the list.  I believe I fixed it - stupid user error on my part.  I had left NaN’s in my topography/bathymetry file by accident.  I fixed those and it runs perfect now.  

Sorry about that.  And thank you for responding!

Anthony


Anthony J. Coletti
Climate System Research Center
Department of Geosciences
Morrill Building
611 N. Pleasant Street
233 Morrill Science Center
University of Massachusetts-Amherst
paleoclimate.org
Email: ajcolett at geo.umass.edu
http://blogs.umass.edu/ajcolett/

“For me, I am driven by two main philosophies: know more today about the world than I knew yesterday and lessen the  suffering of others. You'd be surprised how far that gets you.” ― Neil deGrasse Tyson




On Feb 20, 2014, at 1:29 PM, Ryan Abernathey <ryan.abernathey at gmail.com> wrote:

> Anthony,
> 
> You'll have to provide some more information in you want help. For starters, your data file and the tail of the output from STDOUT and STDERR.
> 
> -Ryan
> 
> 
> On Thu, Feb 20, 2014 at 12:07 PM, Anthony Coletti <ajcolett at geo.umass.edu> wrote:
> Hello list,
> 
> Anyone know why I keep getting this error?  I get a “segmentation fault” error.  I haven’t changed anything since my last run (except my bathymetry file which I checked is correct) and I am restarting from a checkpoint file.  Any ideas?  Thanks!
> 
> _pmii_daemon(SIGCHLD): [NID 03899] [c14-2c1s6n3] [Thu Feb 20 12:05:28 2014] PE 56 exit signal Segmentation fault
> _pmii_daemon(SIGCHLD): [NID 13383] [c11-0c2s1n3] [Thu Feb 20 12:05:28 2014] PE 61 exit signal Segmentation fault
> _pmii_daemon(SIGCHLD): [NID 03895] [c14-2c1s5n3] [Thu Feb 20 12:05:28 2014] PE 6 exit signal Segmentation fault
> _pmii_daemon(SIGCHLD): [NID 03896] [c14-2c1s6n0] [Thu Feb 20 12:05:28 2014] PE 16 exit signal Segmentation fault
> [NID 03895] 2014-02-20 12:05:28 Apid 1511759: initiated application termination
> _pmii_daemon(SIGCHLD): [NID 03898] [c14-2c1s6n2] [Thu Feb 20 12:05:28 2014] PE 37 exit signal Segmentation fault
> _pmii_daemon(SIGCHLD): [NID 03897] [c14-2c1s6n1] [Thu Feb 20 12:05:28 2014] PE 26 exit signal Segmentation fault
> Application 1511759 exit codes: 139
> Application 1511759 resources: utime ~8s, stime ~0s
> ~                                                    Anthony J. Coletti
> 
> Anthony
> 
> Climate System Research Center
> Department of Geosciences
> Morrill Building
> 611 N. Pleasant Street
> 233 Morrill Science Center
> University of Massachusetts-Amherst
> paleoclimate.org
> Email: ajcolett at geo.umass.edu
> http://blogs.umass.edu/ajcolett/
> 
> “For me, I am driven by two main philosophies: know more today about the world than I knew yesterday and lessen the  suffering of others. You'd be surprised how far that gets you.” ― Neil deGrasse Tyson
> 
> 
> 
> 
> 
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