[MITgcm-support] Make Depend: does not symbolic link the needed files

[Martin Losch]

Dierk,
at what stage (after which make command) does this error occur? 

can you create properly working symbolic links "by hand" on your system (with ln -s)? It looks to me like a error unrelated to genmake2, but rather to you system.

Martin

On Nov 14, 2013, at 5:42 PM, Dierk Polzin <dtpolzin at wisc.edu> wrote:

> After I run genmake using ifort I have run into a problem that all the files needed to be symbolically linked are broken..
> 
> Where do I look in genmake2 to fix this?
> 
> ls: cannot read symbolic link o2_surfforcing.F: Protocol error
> ls: cannot read symbolic link mnc_cw_missingvals.F: Protocol error
> ls: cannot read symbolic link RECIP_DYF_MACROS.h: Protocol error
> ls: cannot read symbolic link initialise_varia.F: Protocol error
> ls: cannot read symbolic link RECIP_DYG_MACROS.h: Protocol error
> ls: cannot read symbolic link TANPHIATV_MACROS.h: Protocol error
> ls: cannot read symbolic link MNC_CW_READWRITE_I.F: Protocol error
> ls: cannot read symbolic link RECIP_DYC_MACROS.h: Protocol error
> ls: cannot read symbolic link RECIP_DXV_MACROS.h: Protocol error
> ls: cannot read symbolic link TANPHIATU_MACROS.h: Protocol error
> ls: cannot read symbolic link mom_hdissip.F: Protocol error
> ls: cannot read symbolic link external_forcing.F: Protocol error
> ls: cannot read symbolic link gchem_init_fixed.F: Protocol error
> ls: cannot read symbolic link gmredi_mnc_init.F: Protocol error
> ls: cannot read symbolic link mon_set_iounit.F: Protocol error
> ls: cannot read symbolic link adams_bashforth3.F: Protocol error
> ls: cannot read symbolic link rbcs_add_tendency.F: Protocol error
> ls: cannot read symbolic link mdsio_writefield.F: Protocol error
> ls: cannot read symbolic link initialise_fixed.F: Protocol error
> ls: cannot read symbolic link RECIP_DYU_MACROS.h: Protocol error
> ls: cannot read symbolic link adams_bashforth2.F: Protocol error
> ls: cannot read symbolic link mom_calc_ke.F: Protocol error
> ls: cannot read symbolic link mdsio_readvector.F: Protocol error
> ls: cannot read symbolic link prestopres.F: Protocol error
> ls: cannot read symbolic link exch_uv_r8_cube.F: Protocol error
> ls: cannot read symbolic link RECIP_DXF_MACROS.h: Protocol error
> ls: cannot read symbolic link mdsio_writelocal.F: Protocol error
> ls: cannot read symbolic link RECIP_DXG_MACROS.h: Protocol error
> ls: cannot read symbolic link exch_uv_r4_cube.F: Protocol error
> ls: cannot read symbolic link RECIP_DXC_MACROS.h: Protocol error
> ls: cannot read symbolic link exch_uv_rs_cube.F: Protocol error
> ls: cannot read symbolic link exch_uv_rl_cube.F: Protocol error
> ls: cannot read symbolic link calc_diffusivity.F: Protocol error
> ls: cannot read symbolic link ptracers_init.F: Protocol error
> ls: cannot read symbolic link pressure_for_eos.F: Protocol error
> 
> Thanks Dierk
> 
> 
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