[MITgcm-support] disabling NETcdf

[anurag shukla]

Dear Sir/Mam
                    I am trying to implement Sea Ice package for my
Research work,but I am beginner and so much idea about MITGCM,Please
suggest me the way by which how can I implement it.Please suggest me form
where I should start..


On Thu, May 23, 2013 at 6:26 AM, Martin Losch <Martin.Losch at awi.de> wrote:

> Neil,
>
> in code/package.conf comment out the line "mnc". That will disable the
> package.
>
> There is a test during the genmake2 process that checks on the netcdf
> libraries (and disables the package, if they are not found), but this test
> never runs an executable, so that this shared-library issue is not caught.
>
> Martin
>
> On May 23, 2013, at 2:36 PM, Neil Patel <nigellius at gmail.com> wrote:
>
> > Thanks everyone for your help. I ended up using an ifort compiler, which
> seemed not to need the -D_d=D option so I left it out. However, once I ran
> mitgcm I got this error message:
> >
> > exp2/build> ./mitgcmuv > output.txt
> > ./mitgcmuv: error while loading shared libraries: libnetcdff.so.5:
> cannot open shared object file: No such file or directory
> >
> > I don't where (or if) NETcdf libraries are installed, nor am I
> interested in using them. I didn't think my opt file had any lines for
> NETcdf, so I'm puzzled why it's accessing netcdf. To be sure, I added the
> -disable=mnc keyword to make sure. Here's my optfile:
> >
> > FC=/opt/intel/bin/ifort
> > F90C=/opt/intel/bin/ifort
> > qCC=cc
> > LINK='/opt/intel/bin/ifort'
> >
> >
> > DEFINES='-DWORDLENGTH=4'
> > CPP='cpp -traditional -P'
> > F90FIXEDFORMAT='-fixed -Tf'
> > EXTENDED_SRC_FLAG='-132'
> >
> > NOOPTFLAGS="-O0 -g -m64"
> > NOOPTFILES=''
> > MCMODEL='-fPIC'
> >
> >
> > FFLAGS="$FFLAGS -W0 -WB -convert big_endian -assume byterecl $MCMODEL"
> >
> >
> > if test "x$IEEE" = x ; then     #- with optimisation:
> >   FOPTIM='-O3 -align'
> >    FOPTIM='-O3 -ipo -align'
> > else
> > if test "x$DEVEL" = x ; then  #- no optimisation + IEEE :
> >   FOPTIM='-O0 -noalign -fp-model precise'
> > else
> >                      #- development/check options:
> >   FOPTIM='-O0 -noalign -fp-model precise'
> >   FOPTIM="$FOPTIM -g -check all -fpe0 -traceback -ftrapuv -fp-model
> except -warn all"
> > fi
> > fi
> >
> > F90FLAGS=$FFLAGS
> > F90OPTIM=$FOPTIM
> > CFLAGS="-O0 $MCMODEL"
> >
> > INCLUDEDIRS=''
> > INCLUDES=''
> > LIBS=''
> >
> >
> > if [ -n "$MPI_INC_DIR" -a "x$MPI" = xtrue ] ; then
> >   LIBS="$LIBS -lmpi"
> >   INCLUDES="$INCLUDES -I$MPI_INC_DIR"
> >   INCLUDEDIRS="$INCLUDEDIRS $MPI_INC_DIR"
> >   MPIINCLUDEDIR="$MPI_INC_DIR"
> >   MPI_HEADER_FILES='mpif.h mpiof.h'
> >   MPI_HEADER_FILES_INC='./mpi_headers/mpif.h ./mpi_headers/mpiof.h'
> > fi
> >
> > else
> > if test "x$DEVEL" = x ; then  #- no optimisation + IEEE :
> >   FOPTIM='-O0 -noalign -fp-model precise'
> > else                          #- development/check options:
> >   FOPTIM='-O0 -noalign -fp-model precise'
> >   FOPTIM="$FOPTIM -g -check all -fpe0 -traceback -ftrapuv -fp-model
> except -warn all"
> > fi
> > fi
> >
> >
> > _______________________________________________
> > MITgcm-support mailing list
> > MITgcm-support at mitgcm.org
> > http://mitgcm.org/mailman/listinfo/mitgcm-support
>
>
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