[MITgcm-support] Build with nectdf

[Abhisek Chakraborty]

Roopa,

You should use "inverted commas" in your compiler definition.e.g.
CC="gcc -I/home/roopa/netcdf-3.6.1/include -L/home/roopa/netcdf-3.6.1/lib
-lnetcdf "

and similarly for FC and F90C.

Hope this will work.

Abhisek

On Mon, Jul 30, 2012 at 6:44 PM, taimaz.bahadory <taimaz.bahadory at mun.ca>wrote:

> Do you have your netCDF***/bin directory included in your system $PATH
> too? If not, maybe placing it on the head of your $PATH can resolve the
> problem.
>
> "export PATH=/home/roopa/netcdf-3.6.1/bin:$PATH"
>
>
> On Mon, Jul 30, 2012 at 10:36 AM, Roopashree Shrivastava <
> rss1901 at gmail.com> wrote:
>
>> Dear Abhisek
>>
>> i modified the lines containing the compiler gcc and gfortran to the
>> following as mentioned by you. but genmake2 still can't get the path (i
>> dont know whats the prob??)
>>
>>   CC=gcc -I/home/roopa/netcdf-3.6.1/include
>> -L/home/roopa/netcdf-3.6.1/lib -lnetcdf
>>   FC=gfortran -I/home/roopa/netcdf-3.6.1/include
>> -L/home/roopa/netcdf-3.6.1/lib -lnetcdf
>>   F90C=gfortran -I/home/roopa/netcdf-3.6.1/include
>> -L/home/roopa/netcdf-3.6.1/lib -lnetcdf
>>
>> the output from genmake2 is reproduced here
>>
>> ../../../tools/build_options/linux_amd64_gfortran: line 45:
>> -I/home/roopa/netcdf-3.6.1/include: No such file or directory
>> ../../../tools/build_options/linux_amd64_gfortran: line 46:
>> -I/home/roopa/netcdf-3.6.1/include: No such file or directory
>> ../../../tools/build_options/linux_amd64_gfortran: line 47:
>> -I/home/roopa/netcdf-3.6.1/include: No such file or directory
>>
>> Error: no Fortran compiler: please specify using one of the following:
>>   1) within the options file ("FC=...") as specified by "-of=OPTFILE"
>>   2) the "-fc=XXX" command-line option
>>   3) the "./genmake_local" file
>>
>> any other suggestions
>>
>> thanks
>> Roopa
>>
>>
>> On Fri, Jul 20, 2012 at 3:07 PM, Roopashree Shrivastava <
>> rss1901 at gmail.com> wrote:
>>
>>> hi Abhisek,
>>>  thnks very much for your reply. I am following your instructions and
>>> will get back to you if needed.
>>>
>>> Warm Regards
>>> Roopa
>>>
>>>
>>> On Thu, Jul 19, 2012 at 9:46 PM, Abhisek Chakraborty <
>>> abhisek.sac at gmail.com> wrote:
>>>
>>>> Hello Roopa,
>>>>
>>>> MITgcm at BARC!!! It is very strange to know about nuclear scientists
>>>> interested in simulating ocean circulations!
>>>>
>>>> I generated Global 1deg grid from ETOPO2 global bathymetry data
>>>> (available from NOAA) and for vertical grids, I used Levitus levels. All
>>>> these data are freely available on internet. You can easily download all
>>>> these. Then you can use "gendata.m" (available with MITgcm distribution)
>>>> matlab script to generate your grid.
>>>>
>>>> The data volume is too large to send through mail. So you have to do it
>>>> yourself.
>>>>
>>>> Happy Modelling!
>>>>
>>>> Abhisek
>>>>
>>>>
>>>> On Thu, Jul 19, 2012 at 6:46 PM, Roopashree Shrivastava <
>>>> rss1901 at gmail.com> wrote:
>>>>
>>>>> hi abhisek,
>>>>>  I am Roopa working in BARC Mumbai. i saw ur query on the MITGCM mail
>>>>> sever. actually i cant answer it sine i am too new to this model. However i
>>>>> need a small help from you. how do you generate a grid in MITGCM. for ex if
>>>>> i want a global ocean simulation at 1 deg resolution and 32 vertical levels
>>>>> ( i think this is what u have used) then what is the procedure for
>>>>> obtaining the grid.
>>>>> Any help would be greatly appreciated.
>>>>>
>>>>> Bye
>>>>> Roopa
>>>>>
>>>>
>>>>
>>>
>>
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>
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