[MITgcm-support] Optim.x build problems under OS X gfortran, gcc and GotoBLAS2
Patrick Heimbach
heimbach at MIT.EDU
Thu Sep 16 12:24:18 EDT 2010
To follow up (perhaps again too quickly),
the CPP flags seem to exist, but your line
CPP = cat $< | /usr/bin/gcc -P -traditional
seems suspicious. Shouldn't it be
CPP = cat $< | /usr/bin/cpp -P -traditional
?
-p.
On Sep 16, 2010, at 12:14 PM, Patrick Heimbach wrote:
>
> Hi,
>
> haven't had problems with this in a while,
> but also never tried on Mac so far.
>
> Very(!) quick look suggests a "simple"(?) CPP preprocessor problem
> ("Illegal preprocessor directive")
> which may result in CPP not doing anything
> (therefore you keep the _RL in .f).
>
> I'd check if the "-P -traditional" flags are available,
> and/or how to modify?
>
> -p.
>
>
>
> On Sep 16, 2010, at 11:54 AM, Chris Wilson wrote:
>
>> Hi,
>>
>> I'm trying to build optim.x for use with the adjoint
>> tutorial_global_oce_optim. I've successfully built the
>> associated lsopt and GotoBLAS2 libraries on OS X with gfortran, gcc.
>>
>> My guess would be that the problem lies with the order of
>> processing of my Makefile, but I don't understand enough to know/
>> fix this. _RL should be predefined as a name with the
>> preprocessor via -D_RL='double precision' in the Makefile, but the
>> Fortran stuff is being processed first.
>>
>> I'd be very grateful of any help please. Makefile and error
>> messages are below:
>>
>> uname -a
>> Darwin Chris-Wilsons-MacBook-Pro.local 10.4.0 Darwin Kernel
>> Version 10.4.0: Fri Apr 23 18:28:53 PDT 2010; root:xnu-1504.7.4~1/
>> RELEASE_I386 i386
>>
>> gfortran -v
>> Using built-in specs.
>> Target: x86_64-apple-darwin10
>> Configured with: ../gcc-4.5-20090910/configure --enable-
>> languages=fortran --host=x86_64-apple-darwin10 --build=x86_64-
>> apple-darwin10
>> Thread model: posix
>> gcc version 4.5.0 20090910 (experimental) (GCC)
>>
>> gcc -v
>> Using built-in specs.
>> Target: i686-apple-darwin10
>> Configured with: /var/tmp/gcc/gcc-5664~38/src/configure --disable-
>> checking --enable-werror --prefix=/usr --mandir=/share/man --
>> enable-languages=c,objc,c++,obj-c++ --program-transform-name=/^[cg]
>> [^.-]*$/s/$/-4.2/ --with-slibdir=/usr/lib --build=i686-apple-
>> darwin10 --program-prefix=i686-apple-darwin10- --host=x86_64-apple-
>> darwin10 --target=i686-apple-darwin10 --with-gxx-include-dir=/
>> include/c++/4.2.1
>> Thread model: posix
>> gcc version 4.2.1 (Apple Inc. build 5664)
>>
>> #********************************************************************
>> ***
>> # Makefile for the ECCO off-line large scale optimization.
>> #
>> # started: Patrick Heimbach heimbach at mit.edu 19-Jun-2000
>> #
>> # changed:
>> #
>> #********************************************************************
>> ***
>>
>> # The optimization routines.
>> SRC = optim_main.F \
>> optim_sub.F \
>> optim_numbmod.F \
>> optim_initmod.F \
>> optim_readdata.F \
>> optim_writedata.F \
>> optim_write_control.F \
>> xerbla.F \
>> simul.F
>>
>> EXEDIR = ./
>>
>> # Location of cpp preprocessor
>> # OS X
>> CPP = cat $< | /usr/bin/gcc -P -traditional
>>
>>
>> INCLUDEDIRS = -I. \
>> -I/Users/cwi/scratch/MITgcm_scratch/
>> tutorial_global_oce_optim/
>>
>>
>> LIBDIRS = -L. \
>> -L../lsopt/ \
>> -L/Users/cwi/Work/utilities/GotoBLAS2
>>
>> LIBS = -llsopt_ecco \
>> -lgoto2
>> # -lblas1
>>
>> # OPTMODE is either equal to OFFLINE or ONLINE
>> OPTMODE = OFFLINE
>> EXECUTABLE = $(EXEDIR)optim.x
>>
>> # The cpp flags.
>> CPPFLAGS = -DREAL_BYTE=4 \
>> -DMAX_INDEPEND=1000000 \
>> -D_RL='double precision' \
>> -D_RS='double precision' \
>> -D$(OPTMODE)
>>
>> # -DMAX_INDEPEND=293570968 \
>> # FORTRAN compiler and its flags.
>> # default is (Linux)
>> FC = gfortran
>>
>> FFLAGS= -m64 -fconvert=big-endian -mcmodel=medium -O2
>>
>>
>> # File removal.
>> RM = rm -f
>>
>> SMALLF = $(SRC:.F=.f)
>> OBJECTS = $(SRC:.F=.o)
>>
>> .SUFFIXES: .o .f .F
>>
>> all: $(EXECUTABLE)
>> $(EXECUTABLE): $(OBJECTS)
>> $(FC) -o $@ $(FFLAGS) $(OBJECTS) $(LIBDIRS) $(LIBS)
>>
>> depend:
>> makedepend -o .f $(INCLUDEDIRS) $(SRC)
>>
>> # The normal chain of rules is ( .F - .f - .o )
>> .F.f:
>> $(CPP) $(CPPFLAGS) $(INCLUDEDIRS) > $@
>> xerbla.f: xerbla.F
>> $(CPP) $(INCLUDEDIRS) > $@
>> .f.o:
>> $(FC) $(FFLAGS) -c $<
>>
>> # Cleaning options.
>> clean:
>> $(RM) $(EXEDIR)optim.x *.o *.f
>>
>> scratch:
>> $(RM) OPWARMD OPWARMI $(EXEDIR)optim.x $(OBJ)
>>
>> # DO NOT DELETE THIS LINE -- make depend depends on it.
>>
>> optim_main.f: blas1.h
>> optim_sub.f: /Users/cwi/scratch/MITgcm_scratch/
>> tutorial_global_oce_optim/EEPARAMS.h
>> optim_sub.f: /Users/cwi/scratch/MITgcm_scratch/
>> tutorial_global_oce_optim/SIZE.h
>> optim_sub.f: /Users/cwi/scratch/MITgcm_scratch/
>> tutorial_global_oce_optim/ctrl.h
>> optim_sub.f: optim.h
>> optim_numbmod.f: /Users/cwi/scratch/MITgcm_scratch/
>> tutorial_global_oce_optim/EEPARAMS.h
>> optim_numbmod.f: /Users/cwi/scratch/MITgcm_scratch/
>> tutorial_global_oce_optim/SIZE.h
>> optim_numbmod.f: /Users/cwi/scratch/MITgcm_scratch/
>> tutorial_global_oce_optim/ctrl.h
>> optim_numbmod.f: optim.h minimization.h
>> optim_initmod.f: /Users/cwi/scratch/MITgcm_scratch/
>> tutorial_global_oce_optim/EEPARAMS.h
>> optim_initmod.f: /Users/cwi/scratch/MITgcm_scratch/
>> tutorial_global_oce_optim/SIZE.h
>> optim_initmod.f: /Users/cwi/scratch/MITgcm_scratch/
>> tutorial_global_oce_optim/ctrl.h
>> optim_initmod.f: optim.h
>> optim_readdata.f: /Users/cwi/scratch/MITgcm_scratch/
>> tutorial_global_oce_optim/EEPARAMS.h
>> optim_readdata.f: /Users/cwi/scratch/MITgcm_scratch/
>> tutorial_global_oce_optim/SIZE.h
>> optim_readdata.f: /Users/cwi/scratch/MITgcm_scratch/
>> tutorial_global_oce_optim/ECCO_CPPOPTIONS.h
>> optim_readdata.f: /Users/cwi/scratch/MITgcm_scratch/
>> tutorial_global_oce_optim/ctrl.h
>> optim_readdata.f: optim.h minimization.h
>> optim_writedata.f: /Users/cwi/scratch/MITgcm_scratch/
>> tutorial_global_oce_optim/EEPARAMS.h
>> optim_writedata.f: /Users/cwi/scratch/MITgcm_scratch/
>> tutorial_global_oce_optim/SIZE.h
>> optim_writedata.f: /Users/cwi/scratch/MITgcm_scratch/
>> tutorial_global_oce_optim/ECCO_CPPOPTIONS.h
>> optim_writedata.f: /Users/cwi/scratch/MITgcm_scratch/
>> tutorial_global_oce_optim/ctrl.h
>> optim_writedata.f: optim.h minimization.h
>> optim_write_control.f: /Users/cwi/scratch/MITgcm_scratch/
>> tutorial_global_oce_optim/EEPARAMS.h
>> optim_write_control.f: /Users/cwi/scratch/MITgcm_scratch/
>> tutorial_global_oce_optim/SIZE.h
>> optim_write_control.f: /Users/cwi/scratch/MITgcm_scratch/
>> tutorial_global_oce_optim/ctrl.h
>> optim_write_control.f: optim.h
>> simul.f: /Users/cwi/scratch/MITgcm_scratch/
>> tutorial_global_oce_optim/EEPARAMS.h
>> simul.f: /Users/cwi/scratch/MITgcm_scratch/
>> tutorial_global_oce_optim/SIZE.h
>> simul.f: /Users/cwi/scratch/MITgcm_scratch/
>> tutorial_global_oce_optim/ctrl.h
>>
>> --------------------
>>
>>
>> Chris-Wilsons-MacBook-Pro:~/Work/models/MITgcm/MITgcm_c61v/optim/
>> > make clean
>> rm -f ./optim.x *.o *.f
>> Chris-Wilsons-MacBook-Pro:~/Work/models/MITgcm/MITgcm_c61v/optim/
>> > make depend
>> makedepend -o .f -I. -I/Users/cwi/scratch/MITgcm_scratch/
>> tutorial_global_oce_optim/ optim_main.F optim_sub.F
>> optim_numbmod.F optim_initmod.F optim_readdata.F optim_writedata.F
>> optim_write_control.F xerbla.F simul.F
>> Chris-Wilsons-MacBook-Pro:~/Work/models/MITgcm/MITgcm_c61v/optim/
>> > make
>> gfortran -m64 -fconvert=big-endian -mcmodel=medium -O2 -c
>> optim_main.f
>> Warning: optim_main.f:71: Illegal preprocessor directive
>> gfortran -m64 -fconvert=big-endian -mcmodel=medium -O2 -c
>> optim_sub.f
>> Warning: optim_sub.f:30: Illegal preprocessor directive
>> Warning: optim_sub.f:31: Illegal preprocessor directive
>> Warning: optim_sub.f:33: Illegal preprocessor directive
>> Warning: optim_sub.f:34: Illegal preprocessor directive
>> Warning: optim_sub.f:44: Illegal preprocessor directive
>> Warning: optim_sub.f:50: Illegal preprocessor directive
>> Warning: optim_sub.f:61: Illegal preprocessor directive
>> Warning: optim_sub.f:69: Illegal preprocessor directive
>> Warning: optim_sub.f:72: Illegal preprocessor directive
>> Warning: optim_sub.f:73: Illegal preprocessor directive
>> Warning: optim_sub.f:79: Illegal preprocessor directive
>> Warning: optim_sub.f:96: Illegal preprocessor directive
>> Warning: optim_sub.f:97: Illegal preprocessor directive
>> Warning: optim_sub.f:98: Illegal preprocessor directive
>> Warning: optim_sub.f:108: Illegal preprocessor directive
>> optim_sub.f:42.7:
>>
>> _RL objf
>> 1
>> Error: Invalid character in name at (1)
>> optim_sub.f:45.7:
>>
>> _RL xx(nn)
>> 1
>> Error: Invalid character in name at (1)
>> optim_sub.f:46.7:
>>
>> _RL adxx(nn)
>> 1
>> Error: Invalid character in name at (1)
>> optim_sub.f:47.7:
>>
>> _RL dd(nn)
>> 1
>> Error: Invalid character in name at (1)
>> optim_sub.f:48.7:
>>
>> _RL gold(nn)
>> 1
>> Error: Invalid character in name at (1)
>> optim_sub.f:49.7:
>>
>> _RL xdiff(nn)
>> 1
>> Error: Invalid character in name at (1)
>> optim_sub.f:51.7:
>>
>> _RL xx
>> 1
>> Error: Invalid character in name at (1)
>> optim_sub.f:52.7:
>>
>> _RL adxx
>> 1
>> Error: Invalid character in name at (1)
>> optim_sub.f:53.7:
>>
>> _RL dd(1)
>> 1
>> Error: Invalid character in name at (1)
>> optim_sub.f:54.7:
>>
>> _RL gold(1)
>> 1
>> Error: Invalid character in name at (1)
>> optim_sub.f:55.7:
>>
>> _RL xdiff(1)
>> 1
>> Error: Invalid character in name at (1)
>> optim_sub.f:56.14:
>>
>> pointer (pxx,xx(1))
>> 1
>> Error: Cray pointer declaration at (1) requires -fcray-pointer flag
>> optim_sub.f:57.14:
>>
>> pointer (padxx,adxx(1))
>> 1
>> Error: Cray pointer declaration at (1) requires -fcray-pointer flag
>> optim_sub.f:58.14:
>>
>> pointer (pdd,dd)
>> 1
>> Error: Cray pointer declaration at (1) requires -fcray-pointer flag
>> optim_sub.f:59.14:
>>
>> pointer (pgold,gold)
>> 1
>> Error: Cray pointer declaration at (1) requires -fcray-pointer flag
>> optim_sub.f:60.14:
>>
>> pointer (pxdiff,xdiff)
>> 1
>> Error: Cray pointer declaration at (1) requires -fcray-pointer flag
>> optim_sub.f:63.36:
>>
>> parameter( nmax = MAX_INDEPEND )
>> 1
>> Error: Symbol 'max_independ' at (1) has no IMPLICIT type
>> optim_sub.f:64.7:
>>
>> _RL xx(nmax)
>> 1
>> Error: Invalid character in name at (1)
>> optim_sub.f:65.7:
>>
>> _RL adxx(nmax)
>> 1
>> Error: Invalid character in name at (1)
>> optim_sub.f:66.7:
>>
>> _RL dd(nmax)
>> 1
>> Error: Invalid character in name at (1)
>> optim_sub.f:67.7:
>>
>> _RL gold(nmax)
>> 1
>> Error: Invalid character in name at (1)
>> optim_sub.f:68.7:
>>
>> _RL xdiff(nmax)
>> 1
>> Error: Invalid character in name at (1)
>> optim_sub.f:81.72:
>>
>> integer ifail
>>
>> 1
>> Error: Unexpected data declaration statement at (1)
>> optim_sub.f:82.72:
>>
>> integer itmax
>>
>> 1
>> Error: Unexpected data declaration statement at (1)
>> optim_sub.f:83.72:
>>
>> logical loffline
>>
>> 1
>> Error: Unexpected data declaration statement at (1)
>> Fatal Error: Error count reached limit of 25.
>> make: *** [optim_sub.o] Error 1
>>
>>
>> Chris
>>
>> . . .. ... ..... ........ .............
>> Dr Chris Wilson +(0)151 7954806 http://bit.ly/mesoscale
>> National Oceanography Centre, Liverpool L3 5DA, U.K.
>> ... . .... . ..... ......... .. .......
>>
>>
>>
>> _______________________________________________
>> MITgcm-support mailing list
>> MITgcm-support at mitgcm.org
>> http://mitgcm.org/mailman/listinfo/mitgcm-support
>
> ---
> Patrick Heimbach | heimbach at mit.edu | http://www.mit.edu/~heimbach
> MIT | EAPS 54-1518 | 77 Massachusetts Ave | Cambridge MA 02139 USA
> FON +1-617-253-5259 | FAX +1-617-253-4464 | SKYPE patrick.heimbach
>
>
> _______________________________________________
> MITgcm-support mailing list
> MITgcm-support at mitgcm.org
> http://mitgcm.org/mailman/listinfo/mitgcm-support
---
Patrick Heimbach | heimbach at mit.edu | http://www.mit.edu/~heimbach
MIT | EAPS 54-1518 | 77 Massachusetts Ave | Cambridge MA 02139 USA
FON +1-617-253-5259 | FAX +1-617-253-4464 | SKYPE patrick.heimbach
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