[MITgcm-support] optim.x compilation

Patrick Heimbach heimbach at MIT.EDU
Sat Sep 20 11:07:48 EDT 2008


Hi Matt,

I'm supposed to be offline right now ;o)

Samar is correct, on most platforms we don't use the BLAS libblas  
anymore.
E.g. on IBM you were using the ESSL library.
On the Altix we are using optimized routines by K. Goto
(see lsopt/README).

Let me know if Samar's instructions work, and we'll add them to the doc.
Tom (and Samar?) were experimenting with the use of L-BFGS by Nocedal,
and found very good performance in optimization.
We should try those as well

Cheers
-p.

On Sep 19, 2008, at 8:35 PM, Samar Khatiwala wrote:

> Hi Matt,
>
> A wild guess: don't you need to compile BLAS on ranger to use  
> optim? (I think its needed by the CG solver in the L-BFGS algorithm.)
>
> BLAS performance is not critical for this, but you might as well  
> link to the optimized version available in the
> AMD acml library on ranger. Add this to your .login_user file:
>
> module load acml
>
> Then you can link against:
>
> /opt/apps/pgi7_1/acml/4.0.1/pgi64/lib/libacml.a
>
> or (safer)
>
> $TACC_ACML_LIB/libacml.a
>
> Samar
>
> On Sep 19, 2008, at 6:18 PM, Matthew Mazloff wrote:
>
>> Hello,
>>
>> Well I am having a hard time compiling optim.x on ranger.  I am  
>> not sure what I'm doing wrong...the compilation log starts to look  
>> iffy at
>>
>> f77 -o optim.x  optim_main.o optim_sub.o optim_numbmod.o  
>> optim_initmod.o optim_readdata.o optim_writedata.o  
>> optim_write_control.o xerbla.o simul.o -L. -L../lsopt/          - 
>> llsopt_ecco -lblas
>> /opt/apps/binutils-amd/070220/bin/ld: skipping incompatible ../ 
>> lsopt//libblas.so when searching for -lblas
>> /opt/apps/binutils-amd/070220/bin/ld: skipping incompatible ../ 
>> lsopt//libblas.a when searching for -lblas
>> optim_sub.o: In function `optim_sub__':
>> optim_sub.f:(.text+0x1df): relocation truncated to fit:  
>> R_X86_64_32 against symbol `optiparm_i__' defined in COMMON  
>> section in optim_sub.o
>> optim_sub.f:(.text+0x27f): relocation truncated to fit:  
>> R_X86_64_PC32 against symbol `optiparm_i__' defined in COMMON  
>> section in optim_sub.o
>> optim_sub.f:(.text+0x2b1): relocation truncated to fit:  
>> R_X86_64_32S against `.bss'
>> optim_sub.f:(.text+0x2ba): relocation truncated to fit:  
>> R_X86_64_32S against `.bss'
>> optim_sub.f:(.text+0x2c3): relocation truncated to fit:  
>> R_X86_64_32S against `.bss'
>> optim_sub.f:(.text+0x2c8): relocation truncated to fit:  
>> R_X86_64_32 against symbol `optiparm_i__' defined in COMMON  
>> section in optim_sub.o
>> optim_sub.f:(.text+0x2d6): relocation truncated to fit:  
>> R_X86_64_32 against symbol `optiparm_i__' defined in COMMON  
>> section in optim_sub.o
>> optim_sub.f:(.text+0x2f0): relocation truncated to fit:  
>> R_X86_64_32 against symbol `optiparm_i__' defined in COMMON  
>> section in optim_sub.o
>> optim_sub.f:(.text+0x2fe): relocation truncated to fit:  
>> R_X86_64_32 against symbol `optiparm_r__' defined in COMMON  
>> section in optim_sub.o
>> optim_sub.f:(.text+0x310): relocation truncated to fit:  
>> R_X86_64_32S against symbol `optiparm_r__' defined in COMMON  
>> section in optim_sub.o
>> optim_sub.f:(.text+0x315): additional relocation overflows omitted  
>> from the output
>> collect2: ld returned 1 exit status
>> make: *** [optim.x] Error 1
>>
>>
>>
>> any advice?
>> Thanks
>> Matt
>>
>>
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>
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