[MITgcm-support] Errors on NAMELIST!
Patrick Heimbach
heimbach at MIT.EDU
Thu May 29 15:06:47 EDT 2008
This means,
1) you've fixed your data.pkg problem, and
2) you must have a "mixed" model version.
Namelist EXF_NML_03 didn't exist in checkpoint58j_post
which is the checkpoint you indicated you have.
I assume, you (hopefully) have a clean checkpoint
and just indicated the wrong tag.
For later checkpoints the namelist structure in exf has changed
(painful, but useful) and your file data.exf is out of date.
See e.g.
verification/global_with_exf/input/
verification/lab_sea/input/
for up-to-date files data.exf
(you can adapt yours accordingly).
To get an in-depth understanding of the namelist structure in exf,
see pkg/exf/exf_readparms.F
-Patrick
On May 29, 2008, at 2:49 PM, Van Thinh Nguyen wrote:
> Hi Patrick,
>
> When if comment useCAL in data.pkg, I got an error warning at line:
>
> READ( iUnit, nml = EXF_NML_03 )
>
> of the source file "exf_readparms.f"
>
> Should I comment the "cal" pkg in packages.conf too?
>
> Thanks so much for spending time to help me,
>
> Vth
>
>
> ***************************************
>
> On Thu, 29 May 2008, Patrick Heimbach wrote:
>
>>
>> Hi there,
>>
>> useCAL
>>
>> is not part of the name list (it has been retired from there for a
>> while).
>> Comment it in data.pkg, try again, and let us know
>> (namelists can be a pain).
>>
>> -p.
>>
>> On May 29, 2008, at 12:45 PM, Van Thinh Nguyen wrote:
>>
>>> Hi Patrick,
>>> It 's really painful to figure out my error. I guess something
>>> with my seting up "exf". Would you mind to take a look in my
>>> files "data.*" attached, you would have any idea about this.
>>> Vielen Dank!
>>> Vth
>>> My MITgcmUV version: checkpoint58j_postB
>>> Please read my comments at bottom of each file
>>> =======================
>>> data.pkg
>>> =======================
>>> # Packages
>>> &PACKAGES
>>> useEXF=.TRUE.,
>>> useKPP=.TRUE.,
>>> useCAL=.TRUE.,
>>> # useBulkforce=.TRUE.,
>>> # useThSIce=.TRUE.,
>>> # usePTRACERS=.TRUE.,
>>> # useGCHEM=.TRUE.,
>>> useOBCS=.TRUE.,
>>> useDiagnostics=.TRUE.,
>>> &
>>> ====================
>>> data.exf ====================
>>> # *********************
>>> # External Forcing Data
>>> # *********************
>>> &EXF_NML
>>> #
>>> # uwindstartdate1 = 19920601,
>>> # uwindstartdate2 = 00000,
>>> # uwindperiod = 3600.0,
>>> #
>>> # vwindstartdate1 = 19920601,
>>> # vwindstartdate2 = 00000,
>>> # vwindperiod = 3600.0,
>>> #
>>> ustressstartdate1 = 19920601,
>>> ustressstartdate2 = 000000,
>>> ustressperiod = 3600.0,
>>> #
>>> vstressstartdate1 = 19920601,
>>> vstressstartdate2 = 000000,
>>> vstressperiod = 3600.0,
>>> #
>>> # uwindfile = 'wind_xm9a.bin',
>>> # vwindfile = 'wind_ym9a.bin',
>>> ustressfile = 'tau_xm9a.bin',
>>> vstressfile = 'tau_ym9a.bin',
>>> #
>>> exf_iprec = 64,
>>> exf_yftype = 'RL',
>>> &
>>> #============================================
>>> #I also tried with separated EXF_NML_01 and EXF_NML_02
>>> ========================================
>>> data,cal
>>> =================
>>> # *******************
>>> # Calendar Parameters
>>> # *******************
>>> &CAL_NML
>>> TheCalendar='gregorian',
>>> # TheCalendar='model',
>>> startDate_1=19920601,
>>> startDate_2=000000,
>>> &
>>> =====================
>>> The data.kpp, data.obcs, data.diagnostics are working well with
>>> another runs.
>>> Here is my options in EXP_OPTIONS.h
>>> ==========
>>> #define ALLOW_EXF
>>> #define INCLUDE_EXTERNAL_FORCING_PACKAGE
>>> ============
>>> End of my msg
>>> ----------------
>>> On Mon, 26 May 2008, Patrick Heimbach wrote:
>>>> Hi there,
>>>> you have a variable in one of your data.* files
>>>> that isn't part of the namelist.
>>>> That could happen either,
>>>> * because you mistyped a variable,
>>>> * added a variable that really isn't part of the namelist,
>>>> * have a data.* file that's out of date w.r.t. your code.
>>>> One guess given your output below is that you are using
>>>> a new/recent data.pkg file in conjunction with old code.
>>>> In older versions the flag useEXF didn't yet exist, but
>>>> it's declared in your file.
>>>> Comment it out or remove it, and try again.
>>>> If it still doesn't work, you'll painfully have to figure
>>>> out which is variable is the culprit
>>>> (e.g. via debugger).
>>>> -p.
>>>> On May 26, 2008, at 12:53 PM, Van Thinh Nguyen wrote:
>>>>> Hi all,
>>>>> I got the following error, I check in STD*.OUT but I don't
>>>>> where it come from? Could someone help me to fix it?
>>>>> -------
>>>>> forrtl: severe (19): invalid reference to variable in NAMELIST
>>>>> input, unit 11, file fortIDozJi, line 2, position 8
>>>>> Image PC Routine Line
>>>>> Source
>>>>> mitgcmuv 40000000004AB990 Unknown
>>>>> Unknown Unknown
>>>>> mitgcmuv 40000000004A6B60 Unknown
>>>>> Unknown Unknown
>>>>> mitgcmuv 400000000044C3E0 Unknown
>>>>> Unknown Unknown
>>>>> mitgcmuv 40000000003AC980 Unknown
>>>>> Unknown Unknown
>>>>> mitgcmuv 40000000003ABD80 Unknown
>>>>> Unknown Unknown
>>>>> mitgcmuv 40000000003F0C10 Unknown
>>>>> Unknown Unknown
>>>>> mitgcmuv 4000000000371220 Unknown
>>>>> Unknown Unknown
>>>>> mitgcmuv 400000000035FB80 Unknown
>>>>> Unknown Unknown
>>>>> mitgcmuv 400000000038D650 Unknown
>>>>> Unknown Unknown
>>>>> mitgcmuv 400000000028F680 Unknown
>>>>> Unknown Unknown
>>>>> mitgcmuv 4000000000003E80 Unknown
>>>>> Unknown Unknown
>>>>> libc.so.6.1 2000000005B17C20 Unknown
>>>>> Unknown Unknown
>>>>> mitgcmuv 4000000000003C00 Unknown
>>>>> Unknown Unknown
>>>>> -------
>>>>> And in the STD*.OUT
>>>>> -------
>>>>> (PID.TID 0000.0001) S/R INI_PARMS ; starts to read PARM01
>>>>> (PID.TID 0000.0001) S/R INI_PARMS ; read PARM01 : OK
>>>>> (PID.TID 0000.0001) S/R INI_PARMS ; starts to read PARM02
>>>>> (PID.TID 0000.0001) S/R INI_PARMS ; read PARM02 : OK
>>>>> (PID.TID 0000.0001) S/R INI_PARMS ; starts to read PARM03
>>>>> (PID.TID 0000.0001) S/R INI_PARMS ; read PARM03 : OK
>>>>> (PID.TID 0000.0001) S/R INI_PARMS ; starts to read PARM04
>>>>> (PID.TID 0000.0001) S/R INI_PARMS ; read PARM04 : OK
>>>>> (PID.TID 0000.0001) S/R INI_PARMS ; starts to read PARM05
>>>>> (PID.TID 0000.0001) S/R INI_PARMS ; read PARM05 : OK
>>>>> (PID.TID 0000.0001) PACKAGES_BOOT: opening data.pkg
>>>>> (PID.TID 0000.0001) OPEN_COPY_DATA_FILE: opening file data.pkg
>>>>> (PID.TID 0000.0001) //
>>>>> =======================================================
>>>>> (PID.TID 0000.0001) // Parameter file "data.pkg"
>>>>> (PID.TID 0000.0001) //
>>>>> =======================================================
>>>>> (PID.TID 0000.0001) ># Packages
>>>>> (PID.TID 0000.0001) > &PACKAGES
>>>>> (PID.TID 0000.0001) > useEXF=.TRUE.,
>>>>> (PID.TID 0000.0001) ># useGMRedi=.TRUE.,
>>>>> (PID.TID 0000.0001) > useKPP=.TRUE.,
>>>>> (PID.TID 0000.0001) ># useCAL=.TRUE.,
>>>>> (PID.TID 0000.0001) ># useBulkforce=.TRUE.,
>>>>> (PID.TID 0000.0001) ># useThSIce=.TRUE.,
>>>>> (PID.TID 0000.0001) ># usePTRACERS=.TRUE.,
>>>>> (PID.TID 0000.0001) ># useGCHEM=.TRUE.,
>>>>> (PID.TID 0000.0001) > useOBCS=.TRUE.,
>>>>> (PID.TID 0000.0001) > useDiagnostics=.TRUE.,
>>>>> (PID.TID 0000.0001) > &
>>>>> (PID.TID 0000.0001) --------------
>>>>> Thanks a lot,
>>>>> Van Thinh
>>>>> _______________________________________________
>>>>> MITgcm-support mailing list
>>>>> MITgcm-support at mitgcm.org
>>>>> http://mitgcm.org/mailman/listinfo/mitgcm-support
>>>> ---
>>>> Patrick Heimbach | heimbach at mit.edu | http://www.mit.edu/~heimbach
>>>> MIT | EAPS 54-1518 | 77 Massachusetts Ave | Cambridge MA 02139 USA
>>>> FON +1-617-253-5259 | FAX +1-617-253-4464 | SKYPE patrick.heimbach
>>>> _______________________________________________
>>>> MITgcm-support mailing list
>>>> MITgcm-support at mitgcm.org
>>>> http://mitgcm.org/mailman/listinfo/mitgcm-support
>>> _______________________________________________
>>> MITgcm-support mailing list
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>>
>> ---
>> Patrick Heimbach | heimbach at mit.edu | http://www.mit.edu/~heimbach
>> MIT | EAPS 54-1518 | 77 Massachusetts Ave | Cambridge MA 02139 USA
>> FON +1-617-253-5259 | FAX +1-617-253-4464 | SKYPE patrick.heimbach
>>
>>
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---
Patrick Heimbach | heimbach at mit.edu | http://www.mit.edu/~heimbach
MIT | EAPS 54-1518 | 77 Massachusetts Ave | Cambridge MA 02139 USA
FON +1-617-253-5259 | FAX +1-617-253-4464 | SKYPE patrick.heimbach
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