[MITgcm-support] compilation problem (mnc related ?)

[Nicolas Wienders]

Good night,

Since i have installed (using apt) the nco package on our machine
i can't compile anymore and get the following message at the end
of the of the "make" operation. This is using the mnc package:



.._vector.o global_max.o global_sum.o gsum.o gsum_jam.o  
ini_communication_patterns.o ini_jam.o ini_procs.o  
ini_threading_environment.o main.o memsync.o nml_filter.o  
nml_set_terminator.o print.o scatter_2d.o scatter_vector.o timers.o  
utils.o adams_bashforth2.o adams_bashforth3.o askparam.o  
calc_3d_diffusivity.o calc_buoyancy.o calc_common_factors.o  
calc_diffusivity.o calc_div_ghat.o calc_grad_phi_hyd.o  
calc_grad_phi_surf.o calc_gs.o calc_gt.o calc_gw.o calc_ivdc.o  
calc_phi_hyd.o calc_r_star.o calc_surf_dr.o calc_viscosity.o cg2d.o  
cg3d.o config_check.o config_summary.o convect.o  
convective_adjustment.o convective_adjustment_ini.o  
convective_weights.o convectively_mixtracer.o correction_step.o  
cycle_tracer.o diags_oceanic_surf_flux.o diags_phi_hyd.o  
diags_phi_rlow.o diags_rho.o do_atmospheric_phys.o  
do_fields_blocking_exchanges.o do_gterm_blocking_exchanges.o  
do_oceanic_phys.o do_stagger_fields_exchanges.o do_statevars_diags.o  
do_statevars_tave.o do_the_model_io.o dynamics.o  
external_fields_load.o external_forcing.o external_forcing_surf.o  
find_alpha.o find_rho.o freesurf_rescale_g.o freeze.o  
freeze_surface.o getcon.o grad_sigma.o impldiff.o  
ini_cartesian_grid.o ini_cg2d.o ini_cg3d.o ini_cori.o  
ini_curvilinear_grid.o ini_cylinder_grid.o ini_depths.o ini_dynvars.o  
ini_eos.o ini_forcing.o ini_grid.o ini_gw.o ini_linear_phisurf.o  
ini_masks_etc.o ini_mixing.o ini_p_ground.o ini_parms.o ini_pnh.o  
ini_pressure.o ini_psurf.o ini_salt.o ini_spherical_polar_grid.o  
ini_theta.o ini_vel.o ini_vertical_grid.o initialise_fixed.o  
initialise_varia.o integr_continuity.o integrate_for_w.o  
modeldata_example.o momentum_correction_step.o open_copy_data_file.o  
packages_check.o packages_check_error.o packages_init_fixed.o  
packages_write_pickup.o plot_field.o port_rand.o pressure_for_eos.o  
quasihydrostaticterms.o read_write.o read_write_rec.o set_defaults.o  
solve_for_pressure.o solve_pentadiagonal.o solve_tridiagonal.o  
state_summary.o swfrac.o the_correction_step.o the_main_loop.o  
the_model_main.o thermodynamics.o timestep.o timestep_tracer.o  
tracers_correction_step.o update_cg2d.o update_etah.o update_r_star.o  
update_surf_dr.o write_grid.o write_myfield.o mnc_create_dir.o  
mnc_cw_fsize.o ptwrapper.o tim.o timer_stats.o  -L/usr/local/netcdf/lib
/usr/bin/ld: Undefined symbols:
_nf_close
_nf_get_vara_double
_nf_get_vara_int
_nf_get_vara_real
_nf_inq_dimlen
_nf_inq_unlimdim
_nf_inq_varid
_nf_open
_nf_put_vara_double
_nf_put_vara_int
_nf_put_vara_real
_nf_sync
_nf_def_var
_nf_def_dim
_nf_create
_nf_enddef
_nf_inq
_nf_inq_dim
_nf_inq_var
_nf_put_att_double
_nf_put_att_int
_nf_put_att_real
_nf_put_att_text
_nf_redef
_nf_strerror
make: *** [mitgcmuv] Error 1

Any idea? Is it that the default netcdf library has changed
or something like that? Thanks . Nico





--

Nicolas Wienders                   (850) 644-1987 (office)
Oceanography - OSB415                294-3542 (cell)
Florida State University                    644-2581 (fax)
Tallahassee, FL - 32306    wienders at ocean.fsu.edu