[MITgcm-support] mpi on gfdl origin
Tom Haine
Thomas.Haine at jhu.edu
Wed Sep 1 12:29:26 EDT 2004
I'm running mitgcm with mpi at GFDL with no problems (now!). I use
globalFiles=.TRUE. and it works OK (although it doesn't work on my
opteron cluster). I haven't experimented with useSingleCpuIO=.true. yet.
I have no problem with job control and receive all the usual STD output.
My job script is:
# run on 81 cpus for 480min
#$ -pe lsc.alloc 81 -l h_cpu=8:00:00
#$ -N mitgcmuv -o /home/twh/temp/run1.out
cd $FTMPDIR
echo $FTMPDIR
cp ~/MITgcm/twnh/spill_jet_2km/run1/bin/mitgcmuv .
cp ~/MITgcm/twnh/spill_jet_2km/run1/input/* .
cp /archive/twh/forcing/run1/* .
cp /archive/twh/spill_jet_2km/results/run1/pickup*21600* .
ls -alt
mpirun -np 81 mitgcmuv
ls -alt
# Take care to write data in empty directory!!!!!
/bin/rm -r /archive/twh/spill_jet_2km/results/out
mkdir /archive/twh/spill_jet_2km/results/out
mv * /archive/twh/spill_jet_2km/results/out
Tom.
--------------------------------------------
Thomas W. N. Haine
Associate Professor of Physical Oceanography,
Department of Earth & Planetary Sciences,
329 Olin Hall, The Johns Hopkins University,
Baltimore, MD 21218, USA.
Tel : 410 516 7048, Fax : 410 516 7933
Thomas.Haine at jhu.edu
http://www.jhu.edu/~eps/faculty/haine
--------------------------------------------
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